View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_58 (Length: 272)

Name: NF11036_low_58
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_58
NF11036_low_58
[»] chr1 (12 HSPs)
chr1 (1-265)||(2007814-2008080)
chr1 (1-261)||(2020955-2021217)
chr1 (91-186)||(3364016-3364111)
chr1 (82-164)||(3380264-3380346)
chr1 (82-243)||(3217166-3217327)
chr1 (111-167)||(2947226-2947282)
chr1 (111-167)||(3353406-3353462)
chr1 (91-222)||(3366374-3366505)
chr1 (82-166)||(3374136-3374220)
chr1 (99-149)||(1794136-1794186)
chr1 (92-166)||(3342702-3342776)
chr1 (81-191)||(4333565-4333675)
[»] chr2 (3 HSPs)
chr2 (102-237)||(20924478-20924613)
chr2 (81-186)||(20936139-20936244)
chr2 (123-166)||(39275301-39275344)
[»] chr4 (1 HSPs)
chr4 (81-150)||(21238955-21239024)
[»] chr5 (1 HSPs)
chr5 (118-164)||(17971148-17971194)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 2008080 - 2007814
Alignment:
Q  1 aaggtaaacaacttcagcttgtgctgaggctctcttgaatcgcaacaattccgacatcaacttcgatc--acgttgaaattgggcttcactctcatcttg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||||||     
T  2008080 aaggtaaacaacttcagcttgtgctgaggctctcttgaatcgcaacaattctgacatcaacttcgatccaacgttaaaattgggcttcactctcatcttt 2007981  T
Q  99 tctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacatgtcgcattcgggtgagca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  2007980 tctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccctacatgtcgcactcgggtgagca 2007881  T
Q  199 tggatggctccagaaagatatcttcccagcaaaaggaggcgggtgctagaacgacagtattcttctc 265  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||    
T  2007880 tggatggctccagaaagatatcttcccagcaaaagaaggcgggtgctaaaacgatagttttcttctc 2007814  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2021217 - 2020955
Alignment:
Q  1 aaggtaaacaacttcagcttgtgctgaggctctcttgaatcgcaacaattccgacatcaacttcgatc--acgttgaaattgggcttcactctcatcttg 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||||| ||||  ||||| ||||  |||||||||  ||||||     
T  2021217 aaggtaaacaacttcagcttgtgcggaggctctcttgaatcgcagcagttctgacatcaacttagatccgacgttcaaatcaggcttcacttccatcttt 2021118  T
Q  99 tctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacatgtcgcattcgggtgagca 198  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||| ||| || ||||||||||||||||| | |||||||| || | || || | |    
T  2021117 tctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctttcataccagagatgccttcaatacacacatgtcacacttggatgggta 2021018  T
Q  199 tggatggctccagaaagatatcttcccagcaaaaggaggcgggtgctagaacgacagtattct 261  Q
    |||||||||||| ||||| || |||||| ||| ||||||| ||||||| |||||| |||||||    
T  2021017 tggatggctccaaaaagacattttcccaacaataggaggcaggtgctaaaacgaccgtattct 2020955  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 3364111 - 3364016
Alignment:
Q  91 tcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacatgtcgca 186  Q
    ||||||| ||||| ||||| ||||  | ||| |||||||| |||||||||||||||||||| | |||||||||||| |  |||| |||||||||||    
T  3364111 tcatcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagatttaaagccagagatgccatgcatcctcacatgtcgca 3364016  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 3380346 - 3380264
Alignment:
Q  82 gcttcactctcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatg 164  Q
    |||||||  ||||||| ||||||| ||| |||| |||||||||||| |  |||||||||||||| |||||||| |||||||||    
T  3380346 gcttcacaatcatcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatg 3380264  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 243
Target Start/End: Original strand, 3217166 - 3217327
Alignment:
Q  82 gcttcactctcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacatg 181  Q
    |||||||  ||||||| |||||||  || ||||  | |||||||||||| |||||||||||||||||| |  || ||||||| ||||  || | ||||||    
T  3217166 gcttcaccgtcatcttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagatgtattgtcagagattccttttatgctcacatg 3217265  T
Q  182 tcgcattcgggtgagcatggatggctccagaaagatatcttcccagcaaaaggaggcgggtg 243  Q
     |||| ||||  | ||| || |||||||| ||||| ||||| ||| ||| ||||||||||||    
T  3217266 gcgcactcggaggggcacgggtggctccaaaaagacatctttccaacaataggaggcgggtg 3217327  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 2947226 - 2947282
Alignment:
Q  111 gaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcct 167  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  2947226 gaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 2947282  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 3353462 - 3353406
Alignment:
Q  111 gaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcct 167  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  3353462 gaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 3353406  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 3366505 - 3366374
Alignment:
Q  91 tcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacatgtcgcattcg 190  Q
    ||||||||||||||| ||| |||| | |||||||||| |  |||||||||| ||| |||||||| ||||||||||| || ||   ||||||||||| |||    
T  3366505 tcatcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcgcactcg 3366406  T
Q  191 ggtgagcatggatggctccagaaagatatctt 222  Q
      || |||||| |||| |   |||||||||||    
T  3366405 aatgggcatggctggccctgaaaagatatctt 3366374  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 3374220 - 3374136
Alignment:
Q  82 gcttcactctcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcc 166  Q
    |||||||  ||||||| ||||||||||| ||||   |||||||||| |  |||||||||||||| ||| |||| |||||||||||    
T  3374220 gcttcacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgcc 3374136  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 1794186 - 1794136
Alignment:
Q  99 tctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagat 149  Q
    ||||| ||||| ||||  |||||||||||||| ||||||||||||||||||    
T  1794186 tctaggacaggagaatatagaagtagaaatctgataaaatctaattcagat 1794136  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 3342776 - 3342702
Alignment:
Q  92 catcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcc 166  Q
    |||||| |||||  |||| ||||  ||||||||||||   ||||||||||||||||||||| | |||||||||||    
T  3342776 catcttttctagatcaggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgcc 3342702  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 4333565 - 4333675
Alignment:
Q  81 ggcttcactctcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacat 180  Q
    ||||||||  ||||||| ||||||||  | ||||  |||||||||||||| || |||| ||||||||| | | | ||||||||||| || |||  |||||    
T  4333565 ggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgtcacat 4333664  T
Q  181 gtcgcattcgg 191  Q
    |||||| ||||    
T  4333665 gtcgcactcgg 4333675  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 20924613 - 20924478
Alignment:
Q  102 agcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacatgtcgcattcgggtgagcatgg 201  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||||||| | ||||||||| |||  |||  ||||||| ||| |  |  ||||||      
T  20924613 agcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccagagatgtcttgtatctccacatgttgcaatttgaggagcatat 20924514  T
Q  202 atggctccagaaagatatcttcccagcaaaaggagg 237  Q
     |||||||  ||||||||||||||| ||| ||||||    
T  20924513 ctggctccgaaaagatatcttcccaacaataggagg 20924478  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 20936244 - 20936139
Alignment:
Q  81 ggcttcactctcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgccttcaatccgcacat 180  Q
    ||||||||  ||||||| ||||||||||| ||||  |||||||||||| | ||||||||||||||  ||||| | ||| ||||||| || |||  |||||    
T  20936244 ggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatcgtcacat 20936145  T
Q  181 gtcgca 186  Q
    ||||||    
T  20936144 gtcgca 20936139  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 39275344 - 39275301
Alignment:
Q  123 agaaatctcataaaatctaattcagatttgatgccagagatgcc 166  Q
    |||||| | |||||||||||||||||||||||||||| ||||||    
T  39275344 agaaatttgataaaatctaattcagatttgatgccagcgatgcc 39275301  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 21239024 - 21238955
Alignment:
Q  81 ggcttcactctcatcttgtctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatt 150  Q
    ||||||||  ||||||| |||| || ||| |||| ||||||||||||||| ||||||||||| |||||||    
T  21239024 ggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 21238955  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 17971194 - 17971148
Alignment:
Q  118 gaagtagaaatctcataaaatctaattcagatttgatgccagagatg 164  Q
    ||||||||||||| || |||||||||||||||||| | |||||||||    
T  17971194 gaagtagaaatctaatgaaatctaattcagatttggtaccagagatg 17971148  T

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