View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_60 (Length: 268)
Name: NF11036_low_60
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 46301216 - 46301066
Alignment:
| Q |
1 |
aaataaccatcttagtctttaacataaatcaaatgctagaatagacaa--acaaccttgtatgacatgttcaatattcataacaatgacaaactcattaa |
98 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301216 |
aaataacattcttattctttaacataaatcaaatgctagaatagacaacaacaaccttgtatgacatgttcaatattcataacaatgacaaactcattaa |
46301117 |
T |
|
| Q |
99 |
ataaattaagataatctccaatgcaaatcagtgtagcaaatgtcatcataa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301116 |
ataaattaagataatctccaatgcaaatcagtgtagcaaatgtcatcataa |
46301066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20701616 - 20701540
Alignment:
| Q |
1 |
aaataaccatcttagtctttaacataaatcaaatgctagaatagacaaacaaccttgtatgacatgttcaatattcat |
78 |
Q |
| |
|
||||||| ||||| ||| |||||||||||| ||| || ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
20701616 |
aaataacactcttattctctaacataaatcatatgttacaatagacaa-caaccttgtatgacatggtcaattttcat |
20701540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University