View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_64 (Length: 257)
Name: NF11036_low_64
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 110 - 256
Target Start/End: Original strand, 9124138 - 9124283
Alignment:
| Q |
110 |
acatgagtctcatttttaacatatggaaaatgtcaatgccaattgaatcatcaagagacatacgttacaaacacacttgaaggcatcaaattgatagcag |
209 |
Q |
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| T |
9124138 |
acatgagtctcatttttaacatatggaaaatgt-aatgccaattgaatcatcaagagacatacgttacaaacacacttgaaggcatcaaattgatagcag |
9124236 |
T |
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| Q |
210 |
aatctcaaacggaagaagctacaaagatgaaaccaagtgaattaaaa |
256 |
Q |
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| T |
9124237 |
aatctcaaacggaagaagctacaaagatgaaaccaagtgaattaaaa |
9124283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 183711 - 183839
Alignment:
| Q |
127 |
aacatatggaaaatgtcaatgccaattgaatcatcaagagacatacgttacaaacacacttgaaggcatcaaattgatagcagaatctcaaacggaagaa |
226 |
Q |
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| T |
183711 |
aacatatggaaaatg-caatgccaattgaattctcaagaaacatacgttacaaacacacttgaaggcatcaaattgatagcagaatctcaaacggaagaa |
183809 |
T |
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| Q |
227 |
gctacaaagatgaaaccaagtgaattaaaa |
256 |
Q |
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| T |
183810 |
gctacaaagatgaaaccaagtgaattaaaa |
183839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 9123986 - 9124084
Alignment:
| Q |
15 |
gaggatcacggcaactcacaatcctaatgtggacggtgcatgcaatagagttgaagggtatcaactacaaaaacatgggacatacatatatacatacat |
113 |
Q |
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| T |
9123986 |
gaggatcacggcaactcacaatcctaatgtggacggtgcatgcaatagagttgaagggtatcaactacaaaaacatgggacatacatatatacatacat |
9124084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 183556 - 183615
Alignment:
| Q |
17 |
ggatcacggcaactcacaatcctaatgtggacggtgcatgcaatagagttgaagggtatc |
76 |
Q |
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| T |
183556 |
ggatcaaggcaactcacaatcctaacgtggacggtgcatgcaatagagttgaagggtatc |
183615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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