View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_65 (Length: 254)
Name: NF11036_low_65
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_65 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 43826793 - 43827022
Alignment:
| Q |
27 |
caagaggacttgccaacttggaacctaattaggtaaatttaccaactcatataattgaaaccccttgaagtggcta-gtgccccacatagaaaa-aagga |
124 |
Q |
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| T |
43826793 |
caagaggacttgccaacttggaacctaattaggtaaatttaccaactcatataattgaaaccccttgaagtggctaagtgccccacatagaaaaaaagga |
43826892 |
T |
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| Q |
125 |
caacatttacataataaacttctttaccatttttatttgaaatatatataataaaacaagctgccgacactttcagcagccagtgatgtttggttcaaaa |
224 |
Q |
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| T |
43826893 |
caacatttacataataaacttctttaccatttttatttgaaatatatataataaaacaagctgccgacactttcagcagccagtgatgtttggttcaaaa |
43826992 |
T |
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| Q |
225 |
gcctttatgttttgttccaagcctttcatt |
254 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43826993 |
gcctttatgttttgttccaagcctttcatt |
43827022 |
T |
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