View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_67 (Length: 253)
Name: NF11036_low_67
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_67 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2431576 - 2431798
Alignment:
| Q |
17 |
atacttccggatgaatatcctctttttaagcctatttaaagaccgactttacattgaagttctataattatatttttgacattaaaacaattaattaatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2431576 |
atacttccggatgaatatcctctttttaagcctatttaaagaccgactttacattgaagttctataattatatttttgacattaa--caattaattaatt |
2431673 |
T |
|
| Q |
117 |
tcttctaacttgaaaactataggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatggagattggct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431674 |
tcttctaacttgaaaactataggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatggagattggct |
2431773 |
T |
|
| Q |
217 |
attgttggattcccttttatggttc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
2431774 |
attgttggattcccttttatggttc |
2431798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 2574070 - 2573931
Alignment:
| Q |
102 |
aacaattaattaatttcttctaacttgaaaacta--taggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcat |
199 |
Q |
| |
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||||| || |||||||||| ||| |||||| || |||||||||||||||||| |||||||||||| ||||||| |||| |||||| ||||||||||| |
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| T |
2574070 |
aacaaatagttaatttcttataatttgaaacttacgtaggttccaaattttttgatgaatgcatctatgttccttggaagctacatagcagcatttgcat |
2573971 |
T |
|
| Q |
200 |
tattatggagattggctattgttggattcccttttatggt |
239 |
Q |
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| T |
2573970 |
tgttatggagattggcaattgttgggttcccttttttggt |
2573931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 2646318 - 2646189
Alignment:
| Q |
114 |
atttcttctaacttgaaaactat--aggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatggagat |
211 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||| |||| || |||| | |||||||||||| ||||||||||||||| |
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| T |
2646318 |
atttcttttaacttgaaaactatgtaggttccaaatttgttgatgaatgcatctatgttcattggaagctatatagtagcatttacattattatggagat |
2646219 |
T |
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| Q |
212 |
tggctattgttggattcccttttatggttc |
241 |
Q |
| |
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|||| ||||| || ||||||||||| |||| |
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| T |
2646218 |
tggcaattgtagggttcccttttattgttc |
2646189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 2678539 - 2678409
Alignment:
| Q |
111 |
ttaatttcttctaacttgaaaactata--ggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatgga |
208 |
Q |
| |
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||||||| ||||||||| |||| |||| |||||||||||||||| |||||||||||| |||| || |||| ||||||| ||||||||||| ||||||| |
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| T |
2678539 |
ttaatttattctaacttaaaaattatataggttccaaattttttgatgaatgcatctatgttcattggaagctacatagtggcatttgcattgttatgga |
2678440 |
T |
|
| Q |
209 |
gattggctattgttggattcccttttatggt |
239 |
Q |
| |
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|||| || |||||||| ||||||||| |||| |
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| T |
2678439 |
gattagcaattgttgggttcccttttgtggt |
2678409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 2447701 - 2447833
Alignment:
| Q |
111 |
ttaatttcttctaacttgaaaactata--ggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatgga |
208 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| | ||| ||||| |||| || | | ||||||| ||||||||||| ||||||| |
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| T |
2447701 |
ttaatttattctaacttgaaaactatacaggttccaaattttttgaagcatgtatctaagttcattgggaactacatagtggcatttgcattgttatgga |
2447800 |
T |
|
| Q |
209 |
gattggctattgttggattcccttttatggttc |
241 |
Q |
| |
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||||||| |||||||| ||||||||| |||||| |
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| T |
2447801 |
gattggccattgttgggttcccttttgtggttc |
2447833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 2601515 - 2601410
Alignment:
| Q |
134 |
tataggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatggagattggctattgttggattcccttt |
233 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||| |||| |||||| ||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
2601515 |
tataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttgggttcccttt |
2601416 |
T |
|
| Q |
234 |
tatggt |
239 |
Q |
| |
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| |||| |
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|
| T |
2601415 |
tttggt |
2601410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 2618846 - 2618976
Alignment:
| Q |
111 |
ttaatttcttctaacttgaaaacta--taggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatgga |
208 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||| |||||| || ||||| |||||| ||| || | | ||||||| ||||||||||| ||||||| |
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| T |
2618846 |
ttaatttcttgttacttgaaaactacataggttccgaattttgtgatgaatacatctattttctttggaggatacatagtggcatttgcattgttatgga |
2618945 |
T |
|
| Q |
209 |
gattggctattgttggattcccttttatggt |
239 |
Q |
| |
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||||||| |||||||| ||||||||| |||| |
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| T |
2618946 |
gattggcaattgttgggttcccttttgtggt |
2618976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 2585155 - 2585285
Alignment:
| Q |
111 |
ttaatttcttctaacttgaaaacta--taggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatgga |
208 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||| |||||||| ||||| |||||| ||| || | | ||||||| |||||||| || ||||||| |
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| T |
2585155 |
ttaatttcttgttacttgaaaactacataggttccggattttttgatgaatacatctaatttcattggaggatacatagtggcatttgctttgttatgga |
2585254 |
T |
|
| Q |
209 |
gattggctattgttggattcccttttatggt |
239 |
Q |
| |
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|||| || |||||||| ||||||||| |||| |
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|
| T |
2585255 |
gattagcaattgttgggttcccttttgtggt |
2585285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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