View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_69 (Length: 250)
Name: NF11036_low_69
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2671893 - 2672114
Alignment:
| Q |
19 |
gcttctcccttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataataatgttggttggtcttctttgtagacttacc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2671893 |
gcttctcccttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaatagtaatgttggttggtcttctttgtagacttacc |
2671992 |
T |
|
| Q |
119 |
aaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2671993 |
aaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaat |
2672092 |
T |
|
| Q |
219 |
tttgtatagtactcaacctatg |
240 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2672093 |
tttgtatagtactcaacctatg |
2672114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 2592747 - 2592531
Alignment:
| Q |
24 |
tcccttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataataatgttggttggtcttctttgtagacttaccaaaga |
123 |
Q |
| |
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|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||||| |
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| T |
2592747 |
tcccttaaaacattaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataattatgttggttggtcttatttttagacttatcaaaga |
2592648 |
T |
|
| Q |
124 |
gtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaattttgt |
223 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| || ||||| |
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| T |
2592647 |
gtaatatgctccacttggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttgg |
2592548 |
T |
|
| Q |
224 |
atagtactcaacctatg |
240 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2592547 |
atagtactcaacctatg |
2592531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 2624295 - 2624075
Alignment:
| Q |
20 |
cttctcccttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataataatgttggttggtcttctttgtagacttacca |
119 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||| || |||||||||| |||||||| ||| ||||||||||||||| |||||||||||| || |
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| T |
2624295 |
cttctcccttcaaacattaaaaacaagatattgtttatttatttaatttcatgtggagaatcaacaattatgttggttggtcttttttgtagacttatca |
2624196 |
T |
|
| Q |
120 |
aagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaatt |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || || |
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|
| T |
2624195 |
aagagtaatatgctccacttggccctttagacaacaaggatgaatgtgttccattctcaacaacacttcccttatccaaaacagcaatcaaatcacagtt |
2624096 |
T |
|
| Q |
220 |
ttgtatagtactcaacctatg |
240 |
Q |
| |
|
||| ||||||||||||||||| |
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|
| T |
2624095 |
ttggatagtactcaacctatg |
2624075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2568518 - 2568739
Alignment:
| Q |
19 |
gcttctcccttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataataatgttggttggtcttctttgtagacttacc |
118 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||||| |
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|
| T |
2568518 |
gcttctcccttcaaacatgaaaaacttagtattgtttatttagttgatttcatgtgaagaatacgaaattaaattgtttggtcttctttgcagacttacc |
2568617 |
T |
|
| Q |
119 |
aaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaat |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||| | ||||| || ||||||||||||||||| |||| |
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|
| T |
2568618 |
aaagagtaataagcaccacttggcccttttgacaataaatttgaatgtgttcctttctcaacaacaatgcccttatccaaaacagcaatcaaatcacaat |
2568717 |
T |
|
| Q |
219 |
tttgtatagtactcaacctatg |
240 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2568718 |
tttgtatagtactcaacctatg |
2568739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 2440785 - 2440585
Alignment:
| Q |
40 |
aaacttgatattgtttatttagttgatttcatgtgaagaatcaataataatgttggttggtcttctttgtagacttaccaaagagtaataagctccactt |
139 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| ||| || ||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
2440785 |
aaacttgatcatgtttatttagttaatttcatggcaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccactt |
2440686 |
T |
|
| Q |
140 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaattttgtatagtactcaacctat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| || ||||| |||||||||||||||| |
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|
| T |
2440685 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacaattcccttatccaaaacagcaatcaaatcacagttttgaatagtactcaacctat |
2440586 |
T |
|
| Q |
240 |
g |
240 |
Q |
| |
|
| |
|
|
| T |
2440585 |
g |
2440585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 240
Target Start/End: Original strand, 2640764 - 2640954
Alignment:
| Q |
50 |
ttgtttatttagttgatttcatgtgaagaatcaataataatgttggttggtcttctttgtagacttaccaaagagtaataagctccacttggccctttag |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||| |||||||||||| |||||||||| || || |
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|
| T |
2640764 |
ttgtttatttagttgatttcatgtgaagaaccaacaattgtattggttggtcttctttgtagacttactaaagagtaataaactccacttggtcccaaag |
2640863 |
T |
|
| Q |
150 |
acaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaattttgtatagtactcaacctatg |
240 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2640864 |
acaacaaagatgaatgtgttcctttttcaacaacaatccccttatccaaaacagcaatcaaatcacaattttgtatagtactcaacctatg |
2640954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 2596075 - 2596298
Alignment:
| Q |
18 |
agcttctcccttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataataatgttggttg--gtcttctttgtagactt |
115 |
Q |
| |
|
||||||||||||||| |||| ||| || || |||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||| |
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|
| T |
2596075 |
agcttctcccttcaaacatggaaa-ctggaccttgtttatttagttgatttcatgtgaagaatcaacaattgtattggttatagtcttctttgtagactt |
2596173 |
T |
|
| Q |
116 |
accaaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgc |
215 |
Q |
| |
|
||||||||||||||| |||||||||| || ||| |||||||| |||||||||||||||||||||||| ||||||| || || |||||||||||||| | |
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|
| T |
2596174 |
accaaagagtaataaactccacttggtcccaaagataacaaagacgaatgtgttcctttctcaacaacaattcccttatccaagacagcaatcaaatcac |
2596273 |
T |
|
| Q |
216 |
aattttgtatagtactcaacctatg |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2596274 |
aattttgtatagtactcaacctatg |
2596298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 2451455 - 2451307
Alignment:
| Q |
92 |
ttggttggtcttctttgtagacttaccaaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttccct |
191 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
2451455 |
ttgggtggtcttctttgtagacttaccatagagtaataagctccacttggtcctttagacaacaaagatgaatgtgttcctttctcaataacactaccct |
2451356 |
T |
|
| Q |
192 |
tgtctaaaacagcaatcaaatcgcaattttgtatagtactcaacctatg |
240 |
Q |
| |
|
| || |||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
2451355 |
tatccaaaacaacaatcatatcacaattttgtatagtactcaacctatg |
2451307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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