View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_7 (Length: 658)
Name: NF11036_low_7
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 239 - 641
Target Start/End: Original strand, 18642115 - 18642538
Alignment:
| Q |
239 |
gtattaatcttccgatttataggaaggggtcctaataattcagagttcaactaaagataagtaaaattattcattaggaatcgaatttggttatctt--- |
335 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18642115 |
gtattaatcttccgatttatagggaggggtcctaataattcagagttcaactaaagataagtaaaattattcattaggaatcgaatttggttatccttaa |
18642214 |
T |
|
| Q |
336 |
-----------------agtttattaactaatagagttcaattacttagtttattaatgacatcatgtatacatcatatctctcgagtttctccctctat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18642215 |
tgattggttctagcgagagtttattaactaatagagttcaattacttagtttattaatcgcatcatgtatacatcatatctctcacgtttctccctctat |
18642314 |
T |
|
| Q |
419 |
tatcctcttattaattttatactattaagtctctgctctacgagtcgcggaaaatgtagccatattattccttatccattagagaacatattctttccat |
518 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18642315 |
tatccccttattaattttatactattaagtctctcctctacgagtcgcggagaatgtagccatattattccttatccattagagaacatattctttccat |
18642414 |
T |
|
| Q |
519 |
taactataggccggtcaaccgaaggttcatactcaagcctcaaaatttaattttaaaaagagtct-nnnnnnnttcaatttagttataaatatgtaatat |
617 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18642415 |
taactataggccggtcaacccaaggttcagactctagcctcaaaatttcatgttaaaaagagtctaaaaaaaattcaatttagttataaatatgtaatat |
18642514 |
T |
|
| Q |
618 |
aacttgttgattacatgtgtttct |
641 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18642515 |
aacttgttgattacatgtgtttct |
18642538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 18641806 - 18641979
Alignment:
| Q |
18 |
atcaatttttataaaaagcttgtattaggctgagtcnnnnnnnnnnnnggtgtactattagataatgatttctaataattttgaaagacttataagatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
18641806 |
atcaatttttataaaaagcttgtattaggctgagtcaaaaaataaaaaggtgtactattagataatgatttctaataattttgaaagacttgtgaactat |
18641905 |
T |
|
| Q |
118 |
cgtctcaatnnnnnnnngtcatgtggtannnnnnnattaaaaagtaatatggtattcgatagaacaattaaagt |
191 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
18641906 |
cgtctcaataaaaaaaagtcatgtggtatttttttattaaaaagtaatgtggtattcaatggaacaattaaagt |
18641979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University