View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_8 (Length: 657)
Name: NF11036_low_8
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_8 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Complemental strand, 2516434 - 2515810
Alignment:
| Q |
19 |
atggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2516434 |
atggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcacaaatttggcacatatcatatataagcggattcgtat |
2516335 |
T |
|
| Q |
119 |
gcaaggtttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2516334 |
gcaaggtttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagac |
2516235 |
T |
|
| Q |
219 |
atagctgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2516234 |
atagctgagggtcttgagaaaggtcctgcagccttggttggcatctttagcggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaag |
2516135 |
T |
|
| Q |
319 |
catttgtttttcctatgtattgttatgttgtcaattttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcat |
418 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2516134 |
catttgtttttcctatgttttgttatgttgtcaattttttcaaatcttttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcat |
2516035 |
T |
|
| Q |
419 |
atctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttcctttt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2516034 |
atctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttcctttt |
2515935 |
T |
|
| Q |
519 |
ctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcgttcacatgtatggtatactccaacaccgacacat |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2515934 |
ctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcattcacatgtatggtatactccaacaccgacacat |
2515835 |
T |
|
| Q |
619 |
cacatgtgattacattcaatcagtt |
643 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
2515834 |
cacatgtgattacattcaatcagtt |
2515810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 532
Target Start/End: Complemental strand, 2496859 - 2496344
Alignment:
| Q |
21 |
ggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgc |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| ||| |
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|
| T |
2496859 |
ggccgcatacctgcatgtggaatgatctcacagtacaatcttacgcaacctgaagctgtaacgaatttggcacatatcatatataagcggattcgcatgg |
2496760 |
T |
|
| Q |
121 |
aagg-tttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagaca |
219 |
Q |
| |
|
|||| ||| || || ||| ||| | ||| ||| | | ||||| || ||||||||||| |||||||| ||||| || | | |||||||||| ||||||| |
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|
| T |
2496759 |
aagggtttaacagt-gctgatttctttcacctaaatcctaaattgttggagtttgtcctccctcatatcagagatgggaagattgtgtatgttgaagaca |
2496661 |
T |
|
| Q |
220 |
tagctgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagc |
319 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
2496660 |
taactgagggtcttgagaatggccctgcagccttgattggcctatatagtggtcgcaatgttggtaaacaagtggttgtcgttgctcgggaatagaaagc |
2496561 |
T |
|
| Q |
320 |
atttgtttttcctatgtattgttatgttgtcaatt-ttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcat |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||| |||||| || | ||||||| |||||||| |
|
|
| T |
2496560 |
atttgcttttcctatgtattgttatgttgtcaatttttttcaaatcttttatagaatgtttagttgtctttgtaccacttttgcagtcatc-tttttcat |
2496462 |
T |
|
| Q |
419 |
atctatgaat-----atatgatgaga-ctgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttactt |
512 |
Q |
| |
|
|| ||||||| ||||||||||| |||||||||||||| | ||||||||||| |||| | ||| ||||||||| |||| ||||||||||||| ||| |
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|
| T |
2496461 |
atgtatgaatgtatgatatgatgagacctgtgttcctgatagttcagggagctgtataatgtatta--gtgttattgatagaaaataaaagcatttgctt |
2496364 |
T |
|
| Q |
513 |
ccttttctgcattgtcatct |
532 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
2496363 |
gcctttgtgcattgtcatct |
2496344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 2512163 - 2511870
Alignment:
| Q |
19 |
atggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtat |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2512163 |
atggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtgtaacaaatttggcacatatcatatataagcggattcgttt |
2512064 |
T |
|
| Q |
119 |
gcaaggtttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagac |
218 |
Q |
| |
|
||||||||| ||||| | |||| ||||||||||| |||| |||||||| || |||||||||||||| |||||||| | ||||||||||||||||||| |
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|
| T |
2512063 |
gcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagacttcgtcctgcctcatatcagagaagggaaggttgtgtatgtggaagac |
2511964 |
T |
|
| Q |
219 |
atagctgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2511963 |
atagctgagggtcttgagaaaggtcctgcagctttggttggcatatttagtggtaaaaatgttggcaaacaagtgcttgttgttgctcgtgaat |
2511870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 2505537 - 2505249
Alignment:
| Q |
24 |
cgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaag |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||| |
|
|
| T |
2505537 |
cgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtgtgacaaatttggcacatatcgtatataagcgggtccgtttgcaag |
2505438 |
T |
|
| Q |
124 |
gtttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagc |
223 |
Q |
| |
|
|||| | |||||| |||| |||||||||||| |||||||| |||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |
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|
| T |
2505437 |
gttttattgtagctgattactatcatctatacggaaaattcttggagtttgtcctgcctcatatcagagaagggaaggttgtgtatgtagaagacatagc |
2505338 |
T |
|
| Q |
224 |
tgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
312 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2505337 |
tgagggtcttgagaaaggccctgaagccttggttggcatatttagtggcaaaaatgttggcaaacaagtgcttgttgttgctcgtgaat |
2505249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 27 - 306
Target Start/End: Original strand, 2429586 - 2429865
Alignment:
| Q |
27 |
atacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||||| |
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|
| T |
2429586 |
atacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtgtcacaaatttggcacatatcatatataagcggatccggatggaaggtt |
2429685 |
T |
|
| Q |
127 |
tcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctga |
226 |
Q |
| |
|
| | ||| | | || |||||||| || || |||||||| |||||| | ||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2429686 |
ttgctgtatttgaatactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctga |
2429785 |
T |
|
| Q |
227 |
gggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctc |
306 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2429786 |
gggtcttgagaatggccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctc |
2429865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 2435921 - 2436214
Alignment:
| Q |
19 |
atggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |
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|
| T |
2435921 |
atggccgcatacctgtaagtggaatgatctcacagtacaatcttactcaacctgaaggtgtcacaaatttggcacaaatcatatataagcggattcggat |
2436020 |
T |
|
| Q |
119 |
gcaaggtttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagac |
218 |
Q |
| |
|
| ||||| || || |||| | ||| || || || |||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
2436021 |
cgagggttttgttatatctgattactttcacctttatacaaaattcttggagtttgtcctgcctcttataagagaaggaaaggttgtgtatgtggaagac |
2436120 |
T |
|
| Q |
219 |
atagctgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||| ||||| | | |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2436121 |
atagctgagggtcttgagaatggtcctgctgcattgattggcctatatagtggtcgcaatgttggtaaacaagtggttgctgttgctcatgaat |
2436214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 2432560 - 2432853
Alignment:
| Q |
19 |
atggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |
|
|
| T |
2432560 |
atggccgcatacctgtaagtggaatgatctcacagtataatctcactcaacctgaaggtgtcacaaatttggcacaaatcatatataagcggattcggtt |
2432659 |
T |
|
| Q |
119 |
gcaaggtttcaccgtagctaattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagac |
218 |
Q |
| |
|
| ||||| || || |||| | ||| || || || |||||||| || ||||||||||||| |||||||||||| | | ||||||||||||||||| |
|
|
| T |
2432660 |
cgagggttttgttatatctgattactttcacctttatacaaaattcttggaatttgtcctgcctcttataagagaaggaaagattgtgtatgtggaagac |
2432759 |
T |
|
| Q |
219 |
atagctgagggtcttgagaaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||| ||||| | | |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2432760 |
atagctgagggtcttgagaatggtcctgctgcattgattggcctatacagtggtcgcaatgttggtaaacaagtggttgttgttgctcatgaat |
2432853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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