View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_82 (Length: 241)
Name: NF11036_low_82
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_82 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 46764217 - 46763995
Alignment:
| Q |
19 |
tagaagttgtctggaacgatcgcctgtggaagaaagacgaattcttctgcctagctgatccctcaaaatctgcattcagctctacaactggctgaggaat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46764217 |
tagaagttgtctggaatgatcgcctgtggaagaaagacgaattcttctgcctagctgatccctcaaaatctgcattcagctctacaactggctgaggaat |
46764118 |
T |
|
| Q |
119 |
tggagacggtgtatagcatccactacttccactggttccaggaagattgtttaaagtctttctgataagagccaaccattttttggcagggccattgtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46764117 |
tggagacggtgtatagcatccactacttccactggttccaggaagattgtttaaagtctttctgataagagccagccattttttggcagggccattgtcc |
46764018 |
T |
|
| Q |
219 |
tctgcccctaggatattaccggc |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46764017 |
tctgcccctaggatattaccggc |
46763995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 1084580 - 1084361
Alignment:
| Q |
19 |
tagaagttgtctggaacgatcgcctgtggaagaaagacgaattcttctgcctagctgatccctcaaaatctgcattcagctctacaactggctgaggaat |
118 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||| || ||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||| || |
|
|
| T |
1084580 |
tagaagttgtttggaaggatcgccgatggaagaatgatgaattcttctgcctagctgatccttcaaaatcggcattcaattctaccactggctgaggtat |
1084481 |
T |
|
| Q |
119 |
tggagacggtgtatagcatccactacttccactggttccaggaagattgtttaaagtctttctgataagagccaaccattttttggcagggccattgtcc |
218 |
Q |
| |
|
||||| ||||| ||| ||||| ||| |||||| || || |||||| ||||||||| |||| || ||||| | ||||||||||||||||||||| || |
|
|
| T |
1084480 |
aggagaaggtgtgtagtatccattacctccactagtaccgggaagactgtttaaagcatttccaatgagagctagccattttttggcagggccattatct |
1084381 |
T |
|
| Q |
219 |
tctgcccctaggatattacc |
238 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
1084380 |
tctgcccctaagatattacc |
1084361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University