View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_84 (Length: 239)
Name: NF11036_low_84
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 49653537 - 49653759
Alignment:
| Q |
5 |
ttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtactga |
104 |
Q |
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| T |
49653537 |
ttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtactga |
49653636 |
T |
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| Q |
105 |
gcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatgcatggaaagattacaagtcttaaa---tcttactttgctaaacc |
201 |
Q |
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| T |
49653637 |
gcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatgcatggaaagattacaagtcttaaatcttcttactttgctaaacc |
49653736 |
T |
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| Q |
202 |
caaaatcactgtcatttccattt |
224 |
Q |
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| T |
49653737 |
caaaatcactgtcatttccattt |
49653759 |
T |
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Back To:
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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 14382151 - 14382068
Alignment:
| Q |
19 |
cagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtact |
102 |
Q |
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| T |
14382151 |
cagacatggttcttgaaagtttctatccactgtgaaggttgcagaaagaaagtaaagaaagttttaaagcgcattgatggtact |
14382068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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