View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_86 (Length: 238)
Name: NF11036_low_86
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43827046 - 43827263
Alignment:
| Q |
1 |
atttcagagcactagcacttctgcatttattctctttacttccatttccttgcaaactgcaaacaaactcatcatatcatatcatatctattcaaaaacc |
100 |
Q |
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| T |
43827046 |
atttcaaagcactagcacttctgcatttattctctttacttccatttccttgcaaagtgcaaacaaactcatca-----tatcatatctattcaaaaacc |
43827140 |
T |
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| Q |
101 |
attatctcatttatttccatttctttgagagtttcttgctacttgttcacttttgctgatatacacttaacacatgcatacatatacactgcttagtttt |
200 |
Q |
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| T |
43827141 |
attatctcatttatttccatttctttgagagtttcttgctacttgttcacttttgctgatatacacttaacacatgcatacatatacactgcttagtttc |
43827240 |
T |
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| Q |
201 |
atgaattcagtaacacaagttct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43827241 |
atgaattcagtaacacaagttct |
43827263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 17649140 - 17649201
Alignment:
| Q |
68 |
ctcatcatatcatatcatatctattcaaaaaccattatctcatttatttccatttctttgag |
129 |
Q |
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| T |
17649140 |
ctcatcatgtcatatgatgtctattaaaacaccattatctcatttgttcccatttctttgag |
17649201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 1680921 - 1680851
Alignment:
| Q |
94 |
aaaaaccattatctcatttatttccatttctttgagagtttcttgctacttgttcacttttgctgatatacac |
166 |
Q |
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| T |
1680921 |
aaaacccattatctcattcgttgccatttctttgag--tttcttactacctgttcttttttgctgatatacac |
1680851 |
T |
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