View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_87 (Length: 238)

Name: NF11036_low_87

Description: NF11036

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11036_low_87

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 176; E-Value: 6e-95

Query Start/End: Original strand, 1 - 176

Target Start/End: Complemental strand, 39036559 - 39036384

Alignment:

Q	1	acataaggagggaaaatttaatgcgatggctaattttaataaaataatagtaatgttttgcagccaatcaataattaaatgtttggacaaatgaaatttg	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39036559	acataaggagggaaaatttaatgcgatggctaattttaataaaataatagtaatgttttgcagccaatcaataattaaatgtttggacaaatgaaatttg	39036460	T

Q	101	attaaattgataaggatacaactcatgttttgtgtaatgtgcataaggagatacaaattcatgcaacatgtacaag	176	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39036459	attaaattgataaggatacaactcatgttttgtgtaatgtgcataaggagatacaaattcatgcaacatgtacaag	39036384	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 197 - 232

Target Start/End: Complemental strand, 39036372 - 39036337

Alignment:

Q	197	tttctcccattaaatgaataagccgcttcatctcac	232	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	39036372	tttctcccattaaatgaataagccgcttcatatcac	39036337	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]