View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_89 (Length: 229)
Name: NF11036_low_89
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_89 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 46301632 - 46301401
Alignment:
| Q |
7 |
gtaacaacctcttttgaaaagggaaatgataccataatatgaaatgag---------tttaatttgcattgattatgaatgaagagtagatttagtattt |
97 |
Q |
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| T |
46301632 |
gtaacaacctcttttgaaaagggaaatgataccataatatgaaatgagagaaatgagtttaatttgcattgattatgaatgaagagtacatttagtattc |
46301533 |
T |
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| Q |
98 |
atatacaaggctattgtactactaatatgtattaaacttcactaaaatgtactacactatgatgatttgtactactagctatactaactaactcttattc |
197 |
Q |
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| T |
46301532 |
atatacaaggctattgtactactaatatgtattaaacttcactaaaatgtactacactatgatgatttgtactactagctatactaactaactcttattc |
46301433 |
T |
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| Q |
198 |
aagtatttataacagaacaccctccctaaaaa |
229 |
Q |
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| T |
46301432 |
aagtatttataactgaacaacctccctaaaaa |
46301401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 24508754 - 24508690
Alignment:
| Q |
65 |
attgattatgaatgaagagtagatttagtatttatatacaaggctattgtactactaatatgtatt |
130 |
Q |
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| T |
24508754 |
attgattgtgaatga-gagtgcatttaatatttatatacaaggctattgtactactaatatgtatt |
24508690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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