View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_90 (Length: 229)
Name: NF11036_low_90
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_90 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 51270404 - 51270626
Alignment:
| Q |
7 |
cgattgtcggggcggtacttcacccggttgggttcattcctttcccgttactgaacactatgttattgtgcctgaaatgccattgaggtattgtgctcag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51270404 |
cgattgtcggggcggtacttcacccggttgggttcattcctttcccgttactgaacactatgttattgtgcctgaaatgccattgaggtattgtgctcag |
51270503 |
T |
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| Q |
107 |
aatttgctcagggctgaaccaactccgttgtacaaatttcagtggcatcctgagtccaaagcgtttatgcatgttatgtgcaagactagtggaaagattg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51270504 |
aatttgctcagggctgaaccaactccgttgtacaaatttcagtggcatcctgagtccaaagcttttatgcatgttatgtgcaagactagtggaaagattg |
51270603 |
T |
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| Q |
207 |
taagtacatatacttaaatctct |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
51270604 |
taagtacatatacttaaatctct |
51270626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 23308537 - 23308759
Alignment:
| Q |
7 |
cgattgtcggggcggtacttcacccggttgggttcattcctttcccgttactgaacactatgttattgtgcctgaaatgccattgaggtattgtgctcag |
106 |
Q |
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||||||||||| |||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23308537 |
cgattgtcgggccggtacgtcacccggttgggtccattcctttcctgttactcaacactatgttattgtgcctgaaatgccattgaggtattgtgctcag |
23308636 |
T |
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| Q |
107 |
aatttgctcagggctgaaccaactccgttgtacaaatttcagtggcatcctgagtccaaagcgtttatgcatgttatgtgcaagactagtggaaagattg |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
23308637 |
aatttgctcagggctgaaccaactccattgtacaaatttcagtggcatcctgagtccaaagcttttatgcatgttatgtgcaagacgagtggaaagattg |
23308736 |
T |
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| Q |
207 |
taagtacatatacttaaatctct |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
23308737 |
taagtacatatacttaaatctct |
23308759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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