View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_91 (Length: 225)

Name: NF11036_low_91
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_91
NF11036_low_91
[»] chr4 (16 HSPs)
chr4 (16-210)||(6797679-6797873)
chr4 (23-210)||(6729447-6729634)
chr4 (27-210)||(6754425-6754608)
chr4 (25-210)||(5596791-5596976)
chr4 (27-207)||(6816553-6816733)
chr4 (31-210)||(6531215-6531394)
chr4 (25-210)||(6544255-6544440)
chr4 (25-205)||(6652238-6652418)
chr4 (27-210)||(6587135-6587318)
chr4 (25-210)||(6761691-6761876)
chr4 (27-210)||(6740441-6740624)
chr4 (25-210)||(6620344-6620529)
chr4 (23-206)||(6497354-6497537)
chr4 (27-210)||(6838613-6838796)
chr4 (118-210)||(6676843-6676935)
chr4 (27-112)||(6823639-6823724)
[»] scaffold0552 (1 HSPs)
scaffold0552 (27-207)||(7100-7280)
[»] scaffold0286 (1 HSPs)
scaffold0286 (25-210)||(7841-8026)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 6797679 - 6797873
Alignment:
Q  16 aaatgaagagtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6797679 aaatgaagagtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaa 6797778  T
Q  116 ctacacaaagaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6797779 ctacacaaagaaaaccattcaagcatataaaagagatacactaacctcctttgatgatgaagattggcataccataacatcaaatgtagaacctg 6797873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 6729447 - 6729634
Alignment:
Q  23 gagtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacaca 122  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||||| ||||||    
T  6729447 gagtaacctgaagagtataatgttgttcgttgtctattactcttccccagaaaacataacatcagaaggttgcaaaggtatgttaatcataaattacaca 6729546  T
Q  123 aagaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    |||| |||| |||  |  |||||||||||||||||||||||||||||  | || |||||||| | ||||||||||||| |||||||||    
T  6729547 aagagaaccgttctggtttataaaagagatacactaacctcctttgaggacgaggattggcagagcataacatcaaatctagaacctg 6729634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 6754425 - 6754608
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaaga 126  Q
    ||||| |||||||||||||| | | | ||||||||||||| |||||| | ||||||||| ||||||||||| |||||||| |||||||| ||||||||||    
T  6754425 aacctaaagagtatgatgttgttcatcgtctattactctttcccggagaacataacatcggaaggttgccaaggtttgttgatcataaattacacaaaga 6754524  T
Q  127 aaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
     ||||||||| || ||||||||||| || |||||||| |||| |||||| |||||||| |||||||| |||||| |||||||||    
T  6754525 gaaccattcaggcctataaaagagaaactctaacctcttttggtcatgaggattggcagaccataacgtcaaatctagaacctg 6754608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 5596976 - 5596791
Alignment:
Q  25 gtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaa 124  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||||| ||||||||| ||| |||| |||||||| ||||||||    
T  5596976 gtaacctgaagagtatgatgttgtccgttgtctattactcttcctcagagaacataacatcaggaggttgccaaggtgtgttgatcataaattacacaaa 5596877  T
Q  125 gaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    || ||||||||| |  ||||||||||||||||||||||| |||||  |||  ||||||||   ||||||||| ||| |||||||||    
T  5596876 gagaaccattcaggtttataaaagagatacactaacctcatttgaggatgtggattggcagcgcataacatcgaatctagaacctg 5596791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 6816553 - 6816733
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaaga 126  Q
    ||||||||||||||||  |||| | | ||||||||||||||| |||||| ||||| ||||||||||| ||| ||| ||||||||||||| ||||||||||    
T  6816553 aacctgaagagtatgagattattcatcgtctattactcttcctcggaaaacataatatcagaaggtttccaaggtgtgttaatcataaattacacaaaga 6816652  T
Q  127 aaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaac 207  Q
     ||||||||| |  ||||||||||||||||||| ||| |||||| |||| |||||||| | ||||||||||||| ||||||    
T  6816653 gaaccattcaggtttataaaagagatacactaatctcatttgatgatgaggattggcagagcataacatcaaatctagaac 6816733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 6531394 - 6531215
Alignment:
Q  31 tgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaagaaaac 130  Q
    |||||||||||||||| | ||| |||||||||||| | ||||| | ||||||| ||||||||| ||||||| |||||||||| ||  ||||||||| |||    
T  6531394 tgaagagtatgatgttgttcgtcgtctattactctactccggagaacataacagcagaaggttaccatggtgtgttaatcattaatcacacaaagacaac 6531295  T
Q  131 cattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    |||||| || |||||||||||||||||||||||||||||  |||| |||||||| | ||||| ||||||| |||||||||    
T  6531294 cattcaggcctataaaagagatacactaacctcctttgaggatgaggattggcagaacataaaatcaaatctagaacctg 6531215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 6544440 - 6544255
Alignment:
Q  25 gtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaa 124  Q
    ||||| |||||||||||||||| ||||| |||||||||||| | ||||| | ||||||| ||||||||||||||||| |||||||||| ||  |||||||    
T  6544440 gtaacttgaagagtatgatgttgtccgtcgtctattactctactccggagaacataacagcagaaggttgccatggtgtgttaatcattaatcacacaaa 6544341  T
Q  125 gaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    || ||||||||| || |||||||||||||||| ||| |||||| |  |||| |||||| | | ||||||||||||| |||||||||    
T  6544340 gacaaccattcaggcctataaaagagatacaccaacttcctttaaggatgatgattggaagaacataacatcaaatctagaacctg 6544255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 6652238 - 6652418
Alignment:
Q  25 gtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaa 124  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||| |||| |||| | |||||||| ||||| ||| |||| |||||||| ||||||||    
T  6652238 gtaacctgaagagtatgatgttgttcgtcgtctattactcttccccagaaagcatagcttcagaaggatgccaaggtgtgttgatcataaattacacaaa 6652337  T
Q  125 gaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtaga 205  Q
    |  ||||||||| || ||||||||||| |||||||||||||| ||  |||| |||||||| | ||||||||||||| ||||    
T  6652338 ggcaaccattcaggcctataaaagagacacactaacctccttcgaggatgaggattggcagagcataacatcaaatctaga 6652418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 6587318 - 6587135
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaaga 126  Q
    ||||||||||||||||| || | ||||||||||||||||||| |||||| ||||||||||||  ||||||| ||| |||| |||||||| |||||||| |    
T  6587318 aacctgaagagtatgatcttgttcgttgtctattactcttcctcggaaaacataacatcagatagttgccaaggtgtgttgatcataaattacacaaaaa 6587219  T
Q  127 aaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
     ||||||||| |  |||||||||||||| |||||||| |||||  |||| |||||||| | ||||||||| ||| |||||||||    
T  6587218 gaaccattcaggtttataaaagagatacgctaacctcgtttgaggatgaggattggcagagcataacatctaatctagaacctg 6587135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 6761691 - 6761876
Alignment:
Q  25 gtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaa 124  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |  ||| ||||||||||||||||| ||| ||| |||||| || ||| |||| |||    
T  6761691 gtaacctgaagagtatgatgttgttcgttgtctattactcttcctcataaaacataacatcagaaggtttccaaggtgtgttaaacagaaattacataaa 6761790  T
Q  125 gaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    || ||||||||| |  |||||||||||||||||||  || |||||  |||| |||||||| | ||||||||||||| |||||||||    
T  6761791 gagaaccattcaggtttataaaagagatacactaatatcatttgaggatgaggattggcagagcataacatcaaatctagaacctg 6761876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 6740441 - 6740624
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaaga 126  Q
    ||||||||||||||||||||||   ||||||| |||||||| |  || | ||||||||||||||||  ||| ||| |||| |||||||| ||||||||||    
T  6740441 aacctgaagagtatgatgttatttattgtctactactcttctctcgagaacataacatcagaaggtctccaaggtgtgttgatcataaattacacaaaga 6740540  T
Q  127 aaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
     ||||||||| |  ||||||||||||||||||||||| |||||  |||  |||| ||| |  |||||||||||| |||||||||    
T  6740541 gaaccattcaggtttataaaagagatacactaacctcgtttgaagatgtggatttgcagagtataacatcaaatctagaacctg 6740624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 6620529 - 6620344
Alignment:
Q  25 gtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaa 124  Q
    |||||||||||||||||||||| |||||  | ||||||||||| | ||| | ||||||||||||||||||||| ||| |||| ||||| ||  |||||||    
T  6620529 gtaacctgaagagtatgatgttgtccgtcatttattactcttcacaggagaacataacatcagaaggttgccaaggtgtgttgatcattaatcacacaaa 6620430  T
Q  125 gaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    || || |||||| || ||||||||||||||| || ||||||||||  |||| || ||| | | | ||||||||| | |||||||||    
T  6620429 gacaaacattcaggcctataaaagagatacattagcctcctttgaggatgaggactggaagaacttaacatcaagtctagaacctg 6620344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 6497537 - 6497354
Alignment:
Q  23 gagtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacaca 122  Q
    ||||||| |||||||||||||||| | || || ||||||||| || ||||| | |||||||||||||||||||||  |  |||| ||||||||  |||||    
T  6497537 gagtaacttgaagagtatgatgttgttcgctgcctattactcatcaccggacaacataacatcagaaggttgccaaagcgtgttgatcataaatcacaca 6497438  T
Q  123 aagaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaa 206  Q
    |||| ||||||||| || |||||||| || ||||||| ||| ||||  ||||| |||||| | | ||||||||||||| |||||    
T  6497437 aagacaaccattcatgcctataaaagtgaaacactaaactcttttggccatgaggattggaagagcataacatcaaatctagaa 6497354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 6838613 - 6838796
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaaga 126  Q
    ||||||||||||||||| || | | |||||||||||||||||||||| | |||| |||||||||| || || ||| | || |||||||| ||||||||||    
T  6838613 aacctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaagggtgtcaaggtgtattgatcataaattacacaaaga 6838712  T
Q  127 aaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
     || |||||| |  || ||||||||||| |||||||| ||||  ||||| |||||||  ||| |||| |||| | |||||||||    
T  6838713 gaatcattcaggtttacaaaagagatactctaacctcttttggccatgaggattggcggaccgtaacgtcaattctagaacctg 6838796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 6676843 - 6676935
Alignment:
Q  118 acacaaagaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||||||||   ||| |||||||  | ||||||||||||| | |||||||    
T  6676843 acacaaagacaaccattcaactctataaaagagatacactaacctcctttgagattgaggattggcggagcataacatcaaatcttgaacctg 6676935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 6823639 - 6823724
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcat 112  Q
    |||||||||||||||||||| | |   |||||| ||||| || |||||| ||||||||| ||||||||||| ||| |||| |||||    
T  6823639 aacctgaagagtatgatgttgttcaccgtctatcactctccctcggaaaacataacatctgaaggttgccaaggtgtgttgatcat 6823724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 7280 - 7100
Alignment:
Q  27 aacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaaga 126  Q
    ||||||||||||||||  |||| | | ||||||||||||||| |||||| ||||| ||||||||||| ||| ||| ||||||||||||| ||||||||||    
T  7280 aacctgaagagtatgagattattcatcgtctattactcttcctcggaaaacataatatcagaaggtttccaaggtgtgttaatcataaattacacaaaga 7181  T
Q  127 aaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaac 207  Q
     ||||||||| |  ||||||||||||||||||| ||| |||||| |||| |||||||| | ||||||||||||| ||||||    
T  7180 gaaccattcaggtttataaaagagatacactaatctcatttgatgatgaggattggcagagcataacatcaaatctagaac 7100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 7841 - 8026
Alignment:
Q  25 gtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaa 124  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||| |||| |||| | |||||||| ||||| ||| |||| |||||||| ||||||||    
T  7841 gtaacctgaagagtatgatgttgttcgtcgtctattactcttccccagaaagcatagcttcagaaggatgccaaggtgtgttgatcataaattacacaaa 7940  T
Q  125 gaaaaccattcaagcatataaaagagatacactaacctcctttgatcatgaagattggcataccataacatcaaatgtagaacctg 210  Q
    |  ||||||||| || ||||||||||||||| || ||||||||||  |||| || ||| | | | ||||||||| | |||||||||    
T  7941 ggcaaccattcaggcctataaaagagatacattagcctcctttgaggatgaggactggaagaacttaacatcaagtctagaacctg 8026  T

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