View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11037_low_4 (Length: 231)
Name: NF11037_low_4
Description: NF11037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11037_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44623447 - 44623667
Alignment:
| Q |
1 |
ccagttaagaggcaatttgatgataacaattccttgaaaatctccaataagaaatcaaagacatcgttgaatataaataaaaagccaggaaaatcagctg |
100 |
Q |
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| T |
44623447 |
ccagttaagaggcaatttgatgataacaattccttgaaaatctccaataagaaatcaaagacatcgttgaacataaataaaaagccaggaaaatcagctg |
44623546 |
T |
|
| Q |
101 |
ataattcattttccatgctgaggaaagaacttgcatcgttnnnnnnntcattcgcggaatgcaacggacaacaagtagaagagaggcgactgcggtctat |
200 |
Q |
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| T |
44623547 |
ataattcattttccatgctgaggaaagaacttgcatcgttaaaaaaatcattcgcggaatgcaacggacaacaagtagaagagaggcgattgcggtctat |
44623646 |
T |
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| Q |
201 |
aaagagagatattgagaagtg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44623647 |
aaagagagatattgagaagtg |
44623667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 44614364 - 44614518
Alignment:
| Q |
64 |
tcgttgaatataaataaaaagccaggaaaatcagctgataattcattttccatgctgaggaaagaacttgcatcgttnnnnnnntcattcgcggaatgca |
163 |
Q |
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||||||||||||||||||| | |||| ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| | |||||||| |
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| T |
44614364 |
tcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaaaaatcatttgaggaatgca |
44614463 |
T |
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| Q |
164 |
acggacaacaagtagaagagaggcgactgcggtctataaagagagatattgagaa |
218 |
Q |
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| T |
44614464 |
atggacaaaaagtagaagagaggcaattgcggtctataaagagagatattgagaa |
44614518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 39136279 - 39136329
Alignment:
| Q |
171 |
acaagtagaagagaggcgactgcggtctataaagagagatattgagaagtg |
221 |
Q |
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|||||||||||||||| || ||| ||| |||||||||||||||||| |||| |
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| T |
39136279 |
acaagtagaagagaggagattgcagtccataaagagagatattgaggagtg |
39136329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 39488263 - 39488214
Alignment:
| Q |
172 |
caagtagaagagaggcgactgcggtctataaagagagatattgagaagtg |
221 |
Q |
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|||||||||||| || |||||| |||||||||||||||| ||||| |||| |
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| T |
39488263 |
caagtagaagaggggagactgcagtctataaagagagatgttgaggagtg |
39488214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 44951455 - 44951406
Alignment:
| Q |
172 |
caagtagaagagaggcgactgcggtctataaagagagatattgagaagtg |
221 |
Q |
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|||||||||||||||| | ||||| | ||||||||||||||| ||||||| |
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| T |
44951455 |
caagtagaagagaggcaattgcggccgataaagagagatattaagaagtg |
44951406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 19806640 - 19806685
Alignment:
| Q |
171 |
acaagtagaagagaggcgactgcggtctataaagagagatattgag |
216 |
Q |
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|||||||||||||||| || ||| ||| |||||||||||||||||| |
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| T |
19806640 |
acaagtagaagagaggagattgcagtccataaagagagatattgag |
19806685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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