View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11038_high_14 (Length: 223)
Name: NF11038_high_14
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 18337226 - 18337345
Alignment:
| Q |
75 |
caattttgttttgtaggtatttgtagcagtttctacaacaatctcaaggattcttgcatggctgctcgaaaaaatatgatgcaaaacaaagctgcagtga |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
18337226 |
caattttgttttgtaggtatttgtagcagtttctacaacaatctcaaggattcttgcatggctgcttgaaaaaatatggtgcaaaacaaagctgcaatga |
18337325 |
T |
|
| Q |
175 |
aaaggtacgataacaaagag |
194 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18337326 |
aaaggtacgataacaaagag |
18337345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 18336795 - 18336863
Alignment:
| Q |
16 |
atgaatacattttaattatggtttgcttcatcaaatactctctataacatgca-ttccttcaattttgt |
83 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
18336795 |
atgaatacattttaattatggtttacttgatcaaatactctctataacgtgcatttccttcaatcttgt |
18336863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University