View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_high_3 (Length: 548)
Name: NF11038_high_3
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_high_3 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 162 - 530
Target Start/End: Original strand, 52970528 - 52970896
Alignment:
| Q |
162 |
taatacattttcctctgagactgaactagtgaaatataggtcacgttttatcataataaggaagtatgcaatttattcaatatcacatcctataaaatat |
261 |
Q |
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| T |
52970528 |
taatacattttcctctgagactgaacaagtgaaatataggtcacgttttattataataaggaagtatgcaatttattctatatcacatcctataaaatat |
52970627 |
T |
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| Q |
262 |
gctacaaaccttgacttgtgatcctacatataactgattatctagtagtggaatctttaggaagaaatcacatatatagtctagtattcccagcaaaaca |
361 |
Q |
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| T |
52970628 |
gctacaaaccttgacttgtgatcctacatataactgattatctagtagtggaatctttaggaagaaaccacatatatagtctagtattcccagcaaaaca |
52970727 |
T |
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| Q |
362 |
atattataaaagctgtttgatcatgagaccgtgctacttatcaaagaatattgattaaaataatcttaacatagattgaacggtattaattaaagttatg |
461 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52970728 |
atattataaaagctgtttgatcatgagacagtgctacttatcaaagaatattgattaaaataatcttaacatagattgaacggtattaattaaagttatg |
52970827 |
T |
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| Q |
462 |
tgaaatattgtgtcttatgtcaaacatgtacttgcttctttgtttttcttgagaaatctgttggtttat |
530 |
Q |
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| T |
52970828 |
tgaaatatcgtgtcttatgtcaaacatgtacttgcttctttgtttttcttgagaaatctgttggtttat |
52970896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 29822577 - 29822652
Alignment:
| Q |
13 |
agatgaagatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatata |
88 |
Q |
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| T |
29822577 |
agatgaagattatttgtgatttttaattttaagaaattaaagacaaataagtaaatataatataaattatcatata |
29822652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 9769345 - 9769412
Alignment:
| Q |
31 |
atttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatatattgtgagtca |
98 |
Q |
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| T |
9769345 |
atttttaattttaagaaattcaagataaataaagaaagataatataaattatcatatgttgtgagtca |
9769412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 9777148 - 9777068
Alignment:
| Q |
14 |
gatgaagatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatatattgtga |
94 |
Q |
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| T |
9777148 |
gatgaagattgttggtgatttttaattttaggaaatttaagacaaacagagaaagataatataaattatcatatgttgtga |
9777068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 24546891 - 24546964
Alignment:
| Q |
16 |
tgaagatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatatat |
89 |
Q |
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| T |
24546891 |
tgaagattatttgtgatttttaattttaagaaattaaagaaaaataaggaaatataatagaaattatcatatat |
24546964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 28930937 - 28931010
Alignment:
| Q |
15 |
atgaagatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatata |
88 |
Q |
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| T |
28930937 |
atgaagattttttgtgatttttaattttaagaaattaaagacaaataatgaaatataatataaattatcatata |
28931010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 9754148 - 9754223
Alignment:
| Q |
19 |
agatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatatattgtga |
94 |
Q |
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| T |
9754148 |
agattattggtgatttttaattttaggaaattcgagacaaataaaaaaagataatataaattatcatatactgtga |
9754223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 242735 - 242653
Alignment:
| Q |
13 |
agatgaagatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatatattgtgagtc |
97 |
Q |
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| T |
242735 |
agatgaagattgttggtgatttttaattttagaaaattcaagacaaatagggaaagat--tataaatgatcatatgttgtgagtc |
242653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 6709960 - 6709878
Alignment:
| Q |
13 |
agatgaagatcatttgtgatttttaatcttatgaaattaaagacaaataaggaaatataatataaattatcatatattgtgagtc |
97 |
Q |
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| T |
6709960 |
agatgaagattgttggtgatttttaattttagaaaattcaagacaaatagggaaagat--tataaatgatcatatgttgtgagtc |
6709878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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