View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_10 (Length: 349)
Name: NF11038_low_10
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 44843933 - 44843602
Alignment:
| Q |
1 |
acatcaagatagccccaaatacgtacgtgtaaacaacatgacacataatattttgtctactacaacaaaattgatctttttctgttaacacaattttctt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44843933 |
acatcaagatagccccaaatacgt----gtaaacaacatgacacataatattttgtctactacaacaaaattgatctttttctgttaacacaattttctt |
44843838 |
T |
|
| Q |
101 |
gaactcgttcaaaatgtttcttgaatcatcaaatacatctttaccaacttcaaccaatctttccaagctatttttagcaaatttccaaaggtctttccta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44843837 |
gaactcgttcaaaatgtttcttgaatcatcaaatacatctttaccaacttcaaccaatccttccaagctatttttagcaaatttccaaaggtctttccta |
44843738 |
T |
|
| Q |
201 |
attgagatgtatcgtggaaaattaaacttactccttcg-nnnnnnnnnncttgattaaatttccacatgttgaagatttcttctatagttttattgctta |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44843737 |
attgagatgtatcgtggaaaattaaacttactccttcgtttttttttttcttgattaaatttccacatgttgaagatttcttctatagttttattgctta |
44843638 |
T |
|
| Q |
300 |
atagatggaacacaagatggtaggcgagtggaacat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
44843637 |
atagatggaacacaagatggtaggcgagtggaacat |
44843602 |
T |
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