View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11038_low_12 (Length: 328)
Name: NF11038_low_12
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_12 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 6061326 - 6061014
Alignment:
| Q |
16 |
cttcaatcgaattacaatgtattattgatgaccatcaggcagcacatacatatcttcacaacttgtattgcttaaagcaaataattttgcaaatgaattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6061326 |
cttcaatcgaattacaatgtattattgatgaccatcaggcagcacatacatatcttcacaacttgtattgcttaaagcaaataattttgcaaatgaattt |
6061227 |
T |
|
| Q |
116 |
cgcattggtcgatcatgtcaaaattaaaccattgtacattaaatggccttgcagattgaaaccttagcaagcaaaatcgtatgcataacagtacagaaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6061226 |
cgcattggtcgatcatgtcaaaattaaaccattgtacattaaatggccttgcagattgaaaccttagcaagcaaaattgtatgcataacagtacagaaat |
6061127 |
T |
|
| Q |
216 |
ataactaacatcaaatagaagttgtttgaacttaatatacaagtcactcgctatttgataccatgcttgctacttgattcttcaagaacacctagattac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6061126 |
ataactaacatcaaatagaagttgtttgaacttaatatacaagtcactcgctatttgataccatgcttgctacttgattcttcaagaacacctagattac |
6061027 |
T |
|
| Q |
316 |
agcgacttcttct |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6061026 |
agcgacttcttct |
6061014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University