View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_13 (Length: 322)
Name: NF11038_low_13
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 27775053 - 27774748
Alignment:
| Q |
1 |
tcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatcttctttgttttca |
100 |
Q |
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| T |
27775053 |
tcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatcttctttgttttca |
27774954 |
T |
|
| Q |
101 |
attatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagatatttttccttacattgatttttatattgcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774953 |
attatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagatatttttccttacattgatttttatattgcag |
27774854 |
T |
|
| Q |
201 |
atgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctactcctgcaacca |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774853 |
atgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctactcctgcaacca |
27774754 |
T |
|
| Q |
301 |
atgatg |
306 |
Q |
| |
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|||||| |
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| T |
27774753 |
atgatg |
27774748 |
T |
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