View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_16 (Length: 262)
Name: NF11038_low_16
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31790188 - 31790420
Alignment:
| Q |
1 |
cttctacctcctgaaaatccaatccatttcaagaaaacattaatgttataaattctaatcnnnnnnnacaaag------aaaaagtaacctgatttgtgc |
94 |
Q |
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| T |
31790188 |
cttctacctcctgaaaatccaatccatttcaagaaaacattaatattataaattctaatctttttttacaaagaaaaagaaaaagtaacctgatttgtgc |
31790287 |
T |
|
| Q |
95 |
agatttaagaaagggatagttatattaatgtaaccaaaagataactaaatgaaggtttgcatcagtcactgttgtaatgtaaaccaaaaaatgatagatg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790288 |
agatttaagaaagggatagttatattaatgtaaccaaaagataactaattgaaggtttgcatcagtcactgttgtaatgtaaaccaaaaaatgatagatg |
31790387 |
T |
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| Q |
195 |
aaaatgagatattaataaaccttggaaaaaatg |
227 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31790388 |
aaaatgagatattaataaaccttggaaaaaatg |
31790420 |
T |
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