View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_17 (Length: 259)
Name: NF11038_low_17
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_17 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 6060774 - 6061026
Alignment:
| Q |
7 |
ggagcagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacccgat |
106 |
Q |
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| T |
6060774 |
ggagaagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacctgat |
6060873 |
T |
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| Q |
107 |
gaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataacc |
206 |
Q |
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| T |
6060874 |
gaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataacc |
6060973 |
T |
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| Q |
207 |
attttgacttttgatgaatttgcatggagcaatcaggaatagaagaagtcgct |
259 |
Q |
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| T |
6060974 |
attttgacttttgatgaatttgcatggagcaaacaggaatagaagaagtcgct |
6061026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 6047059 - 6047135
Alignment:
| Q |
122 |
gggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
198 |
Q |
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| T |
6047059 |
gggatctcagacatagaccttttatctgacaatgattatgactatgatgaattcttaggtgggagtgaattttctga |
6047135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 6043725 - 6043816
Alignment:
| Q |
104 |
gatgaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
198 |
Q |
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| T |
6043725 |
gatgaagactacccatctgggatctcagacatggatcttttatctgacgatgattatgaatatgacgaattctc---tgggagtgaattttctga |
6043816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 6132511 - 6132428
Alignment:
| Q |
12 |
agagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatg |
95 |
Q |
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| T |
6132511 |
agagatttatagaacaagtcaagtatttacggcttccatatgatgccactgatgattatccatttcaagcggcatttgattatg |
6132428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 6053730 - 6053829
Alignment:
| Q |
15 |
gatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagc---tgaatgtgattatggatcacccgatgaaga |
111 |
Q |
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| T |
6053730 |
gatgtaaagagcagatcaagtattttcggcttccacatgacgccactgatgactatccatttcaaacatctgaatgtgattatggatcacctgttgaaga |
6053829 |
T |
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