View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_2 (Length: 548)
Name: NF11038_low_2
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 31789678 - 31790211
Alignment:
| Q |
16 |
aagaaaggaaatgagaagagagataggtgatatgaacagaaatgacgcaagtaacacagtgaccaaagtagagcaactatcctttctgtttacctcgaat |
115 |
Q |
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| T |
31789678 |
aagaaaggaaatgagaagagagataggtgatatgaacagaaatgacgcaagtaacacagtgaccaaagtagagcaactatcctttctgtttacctcgaat |
31789777 |
T |
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| Q |
116 |
ggtttttaggtaatgttggaccacacctatattgaggagcttcaatgggnnnnnnnn-gggttgcattgcagctttttgattagtttataactttgatca |
214 |
Q |
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| T |
31789778 |
ggtttttaggtaatgttggaccacacctatattgaggagcttcaatggaaaaaaaaaagggttgcattgcagctttttgattagtttataactttgatca |
31789877 |
T |
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| Q |
215 |
tgtggctcctactccaaggaagtcaataaatggaattgcatctgaaggagggggattactcatcagaacttgatctctgtgattttctgctgctgctgcc |
314 |
Q |
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| T |
31789878 |
tgtggctcctactccaaggaagtcaataaatggaattgcatctgaaggagggggattactcatcagaacttgatctctgtgattttctgctgctgctgcc |
31789977 |
T |
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| Q |
315 |
actgatgatagtgaaacttcactgcctaatgttgttgctgctgtggtggaaatatttgatgttaaactgtaaaaattgttgttttgttgttgcattggca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31789978 |
actgatgatagtgaaacttcactgcctaatgttgttgctgctgtggtggaaatatttgatgtgaaactgtaaaaattgttgttttgttgttgcattggca |
31790077 |
T |
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| Q |
415 |
tcatatattgtggatattcatggtagaaaccacttggtgttggtgttggttgattttcatgtaaatcacttggcctatcccagcttctcatttggctata |
514 |
Q |
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| T |
31790078 |
tcatatattgtggatattcatggtagaaaccacttggtgttggtgttggttgattttcatgtaaatcacttggcctatcccagcttctcatttggctata |
31790177 |
T |
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| Q |
515 |
atactcatttcttccacctcctgaaaatccaatc |
548 |
Q |
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| T |
31790178 |
atactcatttcttctacctcctgaaaatccaatc |
31790211 |
T |
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