View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_5 (Length: 483)
Name: NF11038_low_5
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 15317515 - 15317061
Alignment:
| Q |
19 |
gccaatataagaaactctctttgttattgctgttattcttttaactttggataggtgaattttccagtaaacttcataatgaaaaactttgaagtaaaat |
118 |
Q |
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| T |
15317515 |
gccaatataagaaactctctttgttattgctgttattcttttaactttggataggtgaattttccagtaaacttcataatgaaaaactttgaagtaaaat |
15317416 |
T |
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| Q |
119 |
ttcacatatatatttatcacattgtgcatttggttgttaagcaattcattgtcacactaaactcttagagtctgtttgatttgtaaaagataagtatcgg |
218 |
Q |
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| T |
15317415 |
ttcacatatatatttatcacattgtgcatttggttgttaagcaattcattgtcacactaaactcttagagtctgtttgaattgtaaaagataagtatccg |
15317316 |
T |
|
| Q |
219 |
acataacaacacaacacaatg-ttattttggt--attttagaaaatttatattgtggataaaaagttgtggtttggcgacggacaagaattttaaatttt |
315 |
Q |
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| T |
15317315 |
acataacaacacaacacaatgtttattttgattaattttaaaaaacttgtattgtggat-aaaagttgtggtttggcgacggacaagaattttaaatttt |
15317217 |
T |
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| Q |
316 |
gtccaatctcttgtcccacaatttgtctagtcccatgagcagttctaaaatcaaacacaatataactagagttgtcctcttcagtctcttgtttattttt |
415 |
Q |
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| T |
15317216 |
gtccaatctcttgtcccacgatttgtctagtcccatgagcagttctaaaatcaaacacaatataactagagttgtcctcttcattcccttatttattttt |
15317117 |
T |
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| Q |
416 |
tagcagatcaaacgcattcgtatgctatctgataagcaaaataggtatttcattct |
471 |
Q |
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| T |
15317116 |
tagcagatcaaatgcactcgtatgctatctcataagcaaaataggtatttcattct |
15317061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 25395621 - 25395673
Alignment:
| Q |
231 |
aacacaatgttattttggtattttagaaaatttatattgtggataaaaagttg |
283 |
Q |
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| T |
25395621 |
aacaaaatgttattttggtattttagacaacttatatttaggataaaaagttg |
25395673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 49107330 - 49107375
Alignment:
| Q |
364 |
aatcaaacacaatataactagagttgtcctcttcagtctcttgttt |
409 |
Q |
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| T |
49107330 |
aatcaaacacaatataactaaagttgtcatgttcaatctcttgttt |
49107375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 427
Target Start/End: Original strand, 17599010 - 17599136
Alignment:
| Q |
297 |
gacaagaattttaaattttgtccaatctcttgtcccacaatttgtctagtcccatgagcagttctaaaatcaaacacaatataactagagttgtcctctt |
396 |
Q |
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||||||||||| | |||||||| || ||| ||| ||||||| ||||||||| || ||||| |||||||||||||| || |||| ||||||| | | |
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| T |
17599010 |
gacaagaatttcagtttttgtccggtccctttccccccaatttgactagtcccaggaacagttttaaaatcaaacacactacaactgcagttgtcttgtc |
17599109 |
T |
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| Q |
397 |
cagtctcttgtttattttttagcagatcaaa |
427 |
Q |
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||||| | |||||||||||||||||||| |
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| T |
17599110 |
cagtccc----ttattttttagcagatcaaa |
17599136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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