View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_6 (Length: 455)
Name: NF11038_low_6
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 34095291 - 34094864
Alignment:
| Q |
20 |
atggggtgactcatttctgcttgctgatagatacagactggtaatccaatgcaatgtcgccacacgtgtattatcacagtnnnnnnnnnnnnnnnnntta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
34095291 |
atggggtgactcatttctgcttgctgatagatacagactggtaatccaatgcaatgtcgccacacgtgtattatcacaatagagagagaaagagagatta |
34095192 |
T |
|
| Q |
120 |
gagcttaataggattgctttttaatcaatatttaattaattcaattaaaagacaagatgtaggtccattttcactaaccaggataatacataaatgatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095191 |
gagcttaataggattgctttttaatcaatatttaattaattcaattaaaagacaagatgtaggtccattttcactaaccaggataatacataaatgatta |
34095092 |
T |
|
| Q |
220 |
gtatgtgattaattaggaaacatgtcttactattgaaacgaaacccctaatgggattttcccttttgatatgttggaatccattttgtcacccaaaacat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095091 |
gtatgtgattaattaggaaacatgtcttactattgaaacaaaactcctaatgggattttcccttttgatatgttggaatccattttgtcacccaaaacat |
34094992 |
T |
|
| Q |
320 |
ggtcaagagaaaagatctgaattgctgctggcatgctttttggttgtgcccctggctgccagtacatataccttttgaaatatggcaaacaaaaagtggt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34094991 |
ggtcaagagaaaagatctgaattgctgctggcatgctttttggttgtgcccctggctgccagtacatataccttttgaaatatggcaaacaaaaagtggt |
34094892 |
T |
|
| Q |
420 |
caacatgtttcattcttgtgttcatctc |
447 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
34094891 |
cagcatgtttcattcttgtgttcatctc |
34094864 |
T |
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