View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_7 (Length: 423)
Name: NF11038_low_7
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 298899 - 298503
Alignment:
| Q |
1 |
aaattgcagtctctagcttatcaccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298899 |
aaattgcagtctctagcttatcaccagaccttaattccagctagccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactct |
298800 |
T |
|
| Q |
101 |
agttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298799 |
agttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatg |
298700 |
T |
|
| Q |
201 |
ctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaatgattctgagttgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
298699 |
ctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaatgact-----ttgg |
298605 |
T |
|
| Q |
301 |
atgcttaattcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaaatccaatacagca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298604 |
atgcttaattcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaaatccaatacagca |
298505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 73 - 355
Target Start/End: Complemental strand, 301034 - 300752
Alignment:
| Q |
73 |
ccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaat |
172 |
Q |
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|||||||||| ||||||||| ||||| |||||| |||||||||||| ||||| |||||||| | ||| ||||| ||||||||| || | ||| ||| |
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| T |
301034 |
ccctcttgcatcttgtcctc--aactccagttgccccaagtaggtttagtttgaattctacaagcgcttccttttgaggtagttttgcagtttggttaat |
300937 |
T |
|
| Q |
173 |
caatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttg-gaa |
271 |
Q |
| |
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||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |
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| T |
300936 |
caatgaagtgcttccctcttcataaatgctttgccaatccttaaattctgcatccgaaagttcccttgaggcaattacaagagtccttaaaccttgcaaa |
300837 |
T |
|
| Q |
272 |
gaatattcactcaaatg-attctgagttggatgcttaattcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaa |
355 |
Q |
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|||||||||||||||| || ||||||||| ||||||| | |||||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
300836 |
taatattcactcaaatgaatgttgagttggaggcttaatgctaatgttgcttacatagtcattagctaaaatgctaaacattgaa |
300752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 27465478 - 27465757
Alignment:
| Q |
24 |
ccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtt |
123 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||||||||||| | | ||||||||||||||||| ||||| || ||||||||||||||| ||| | |
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| T |
27465478 |
ccagaccttgattccagcttgccgtagggactcaatggcttctggtacaccctcttgcagcttgtc--ctcaattccagttgctccaagtagatttaaat |
27465575 |
T |
|
| Q |
124 |
tgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatgctttgccaatccttaaattctgc |
223 |
Q |
| |
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||||||||| | | |||| | ||||||||||||| | |||| |||| | || | ||| | |||||| ||||| || ||||||| ||| || ||| || |
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| T |
27465576 |
tgcattctataagagctgctgtttgacgtagtttactggctctgtcagttaacgcagtgcttgcctctccatacctgttttgccactccacaagttcagc |
27465675 |
T |
|
| Q |
224 |
atctgaaagatcacttgaggcaattacaagagtccttaaaccttg-gaagaatattcactcaaatgattctgagttggatgc |
304 |
Q |
| |
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||| |||||| || ||||||| |||||| || | |||||||| ||||||||||||| ||||||| ||||||||| |||| |
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| T |
27465676 |
atcagaaagacttctagaggcaactacaagggtgcgcaaaccttgtgaagaatattcacacaaatgactctgagttgcatgc |
27465757 |
T |
|
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