View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11038_low_9 (Length: 400)
Name: NF11038_low_9
Description: NF11038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11038_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 100 - 319
Target Start/End: Original strand, 41342185 - 41342404
Alignment:
| Q |
100 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
199 |
Q |
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| T |
41342185 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
41342284 |
T |
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| Q |
200 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
299 |
Q |
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| T |
41342285 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
41342384 |
T |
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| Q |
300 |
caaaaagttatataatgaga |
319 |
Q |
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|||||||||||||||||||| |
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| T |
41342385 |
caaaaagttatataatgaga |
41342404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 41342449 - 41342488
Alignment:
| Q |
356 |
aaattaagtaagctttataactcaccttctctctgcttct |
395 |
Q |
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| T |
41342449 |
aaattaagtaagctttataactcaccttctctcggcttct |
41342488 |
T |
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