View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_high_1 (Length: 1012)
Name: NF11039_high_1
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 44 - 405
Target Start/End: Original strand, 26246019 - 26246379
Alignment:
| Q |
44 |
tagtactgctatgacaggcaatagcgaaatagcggagaggactaggggtctgctgtgatgctaaagcctattgcagtgcattttcttgtagtgcaatttg |
143 |
Q |
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| T |
26246019 |
tagtactgctatgacaggcaatagcgaaatagcggagaggactaggggtctgctgtgatgctaaagcctgttgcagtgcattttcttgtagtgcaatttg |
26246118 |
T |
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| Q |
144 |
ttgctgcaaataggcgacgaggagagtgttagtacccaaactctagtttgttatttgcaaatggtacgcttagctagagaggcaaaccgtgatttaaaaa |
243 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26246119 |
ttgctgcaaataggcgactaggagagtgttagtacccaaactctggtttgttatttggaaatggtacgcttagctagagaggcaaaccgtgatttaaaaa |
26246218 |
T |
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| Q |
244 |
tcataggaaacgataagagggagatcttcaagcgattta----agaattgagtccttcgggttaggaagtttgctgaccttcaaagttcttgatagttct |
339 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
26246219 |
tcataggaaacgatgagagggagatcttcaagcgatttaagagagaattgagtccttcgggttaggaagtttgctgaccttcaaagttcttcatcgttct |
26246318 |
T |
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| Q |
340 |
ttcctttgtaatcgagtcatatcatatccctatttatttctaataaaataccagattcctatcttc |
405 |
Q |
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| T |
26246319 |
ttcctttgtaattgag-----tcatatccctatttatttctaataaaataccagattcctatcttc |
26246379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 619 - 848
Target Start/End: Original strand, 26246712 - 26246949
Alignment:
| Q |
619 |
gaaactgtcttcctgaccctctttatcccctgcagagaccatttttgtctagtgctacttttcctttccatcctt--------------gtccagttttc |
704 |
Q |
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| T |
26246712 |
gaaactgtcttcgtgaccctctttatcccctgcagagaccatttttgtctagtgctacttttcctttccatcctttcttgtccatctctgtccagttttc |
26246811 |
T |
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| Q |
705 |
cctcatctgtttcatccttattctccgtcacgaccaattcgtcctgttcttctatgttttctttgttaaccaaattgcttctacttctcatgttgctact |
804 |
Q |
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|| |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26246812 |
cc------gtttcatccttattctccctcacgaccaattcttcctgttcttctctgttttctttgttaaccaaattgcttctacttctcatgttgctact |
26246905 |
T |
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| Q |
805 |
agtgagggatttgctgccactcactctcctgtccttagctatag |
848 |
Q |
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||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
26246906 |
agtccgggatttcctgctactcactctcctgtccttagctatag |
26246949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 456 - 519
Target Start/End: Original strand, 26246549 - 26246612
Alignment:
| Q |
456 |
tttctgctcgcaggttagaagaagacatatttatccatgcgggtcataaagaaaacccattttg |
519 |
Q |
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| T |
26246549 |
tttctgctcgcaggttagaagaagacatgtttctccatgcgggtcataaagaaaacccattttg |
26246612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 428 - 462
Target Start/End: Original strand, 26246461 - 26246495
Alignment:
| Q |
428 |
acctcagaaagagattcctatcttctgatttctgc |
462 |
Q |
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| T |
26246461 |
acctcagaaagagattcccatcttctgatttctgc |
26246495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 5390535 - 5390404
Alignment:
| Q |
150 |
caaataggcgacgaggagagtgttagtacccaaactctagtttgttatttgcaaatggtacgcttagctagagaggcaaaccgtgatttaaaaatcatag |
249 |
Q |
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|||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||| |||| |||| |
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| T |
5390535 |
caaataggcgacgaggagagtgttggtacccaaactctggtcggttatttggaaatggtaggcttagctagagaggcagaccgtgatttagaaataatag |
5390436 |
T |
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| Q |
250 |
gaaacgataagagggagatcttcaagcgattt |
281 |
Q |
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|| |||| |||| ||||| |||||||||||| |
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| T |
5390435 |
gatacgaaaagaaagagatgttcaagcgattt |
5390404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 736 - 848
Target Start/End: Complemental strand, 5394856 - 5394744
Alignment:
| Q |
736 |
gaccaattcgtcctgttcttctatgttttctttgttaaccaaattgcttctacttctcatgttgctactagtgagggatttgctgccactcactctcctg |
835 |
Q |
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||||||||| |||||||||||| ||||||| ||||||||||||| ||||| | |||||| ||||||||| |||||| || | |||| ||||||||||| | |
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| T |
5394856 |
gaccaattcttcctgttcttctctgttttcattgttaaccaaatggcttcaaattctcacgttgctactggtgaggcatattctgctactcactctcccg |
5394757 |
T |
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| Q |
836 |
tccttagctatag |
848 |
Q |
| |
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||||||||||||| |
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| T |
5394756 |
tccttagctatag |
5394744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 5389656 - 5389589
Alignment:
| Q |
871 |
tggaaataggagtgattgtgtagaacttactgaaaaaagggaaagcaatgaagtggagggtgttgttg |
938 |
Q |
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||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
5389656 |
tggaaataggagtgattgtatagaacttactgaaaaaagcgatagcagtgaagtggagggtgttgttg |
5389589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 5394692 - 5394625
Alignment:
| Q |
871 |
tggaaataggagtgattgtgtagaacttactgaaaaaagggaaagcaatgaagtggagggtgttgttg |
938 |
Q |
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| T |
5394692 |
tggaaataggagtgattgtatagaacttgctgaaaaaagagaaagcagtgaagtggagggtgttgttg |
5394625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 5390596 - 5390544
Alignment:
| Q |
58 |
caggcaatagcgaaatagcggagaggactaggggtctgctgtgatgctaaagc |
110 |
Q |
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|||| |||||| ||||||||||||||| |||| |||||||||||||||||||| |
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| T |
5390596 |
cagggaatagcaaaatagcggagaggattaggagtctgctgtgatgctaaagc |
5390544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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