View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_high_10 (Length: 456)
Name: NF11039_high_10
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 45977335 - 45976902
Alignment:
| Q |
9 |
gaagcacagaaggaaccctgaactttcaacaaatccgtttctttaacttgttgatcaatctgtccacaacctgcagatatttgaataatggccaagatca |
108 |
Q |
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| T |
45977335 |
gaagcacagaaggaaccctgaactttcaacaaatccgtttctttaacttgttgatcaatctgtccacaacctgcagatatttgaataatggccaagatca |
45977236 |
T |
|
| Q |
109 |
gcttcaaactagaattccgctcttctagctataagatttactgaacagaactaacagagaacaggtcaccatgttcccaaagggttaaaatcaaaattta |
208 |
Q |
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| T |
45977235 |
gcttcaaactagaatttcgctcttctagctataagatttactgaacagaactaacagagaacaggtcaccatgttcccaaagggttaaaatcaaaattta |
45977136 |
T |
|
| Q |
209 |
aattcaaacatgctccacaaatttgataaggaatnnnnnnnctacaggcaacttcaaatctattcactgagactagagttaggtgaagggaaggaagctc |
308 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
45977135 |
aattcaaacatgctccacaaatttgataaggaataaaaaaactacaggcaacttcaaatctattcaatgagactagagctaggtgaagggaaggaagctc |
45977036 |
T |
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| Q |
309 |
acttctgcagtgacg-nnnnnnnngacaaaacacctggctaaggacatacagtacacctggctaatcgatatagtgaataagtttaagtacgatactatg |
407 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45977035 |
acttctgcagtgacgaaaaaaaaagacaaaacacctggctaaggacatacagtacacctggctaatcgatatagtgaataagtttaagtacgatactatg |
45976936 |
T |
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| Q |
408 |
atgtatcctcaaggttgtatccaagaatataact |
441 |
Q |
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| T |
45976935 |
atgtatcctcaaggttgtatccaagaatataact |
45976902 |
T |
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