View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_high_11 (Length: 436)
Name: NF11039_high_11
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 26245475 - 26245694
Alignment:
| Q |
21 |
gttgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatttgaatgg |
120 |
Q |
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| T |
26245475 |
gttgcaggcgagtgataggtttaacataaattcgcaacttgaacatcttcaagctaaatacgttggaactggacatgctgatatcaacagatttgaatgg |
26245574 |
T |
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| Q |
121 |
gctgtgaatattcaacgtgatagctatgcttcatacattggccattttcctttactttcttacttttctatcgctcaaaacgaatctattggcagacagc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26245575 |
gctgtgaatattcaacgtgatagctatgcttcatacattggccattatcctttactttcttacttttctatcgctcaaaacgaatctattggtagacagc |
26245674 |
T |
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| Q |
221 |
gttacacttttatgcaggta |
240 |
Q |
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|||||||||||||||||||| |
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| T |
26245675 |
gttacacttttatgcaggta |
26245694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 5391039 - 5390822
Alignment:
| Q |
23 |
tgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatttgaatgggc |
122 |
Q |
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| T |
5391039 |
tgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagatttgaatgggc |
5390940 |
T |
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| Q |
123 |
tgtgaatattcaacgtgatagctatgcttcatacattggccattttcctttactttcttacttttctatcgctcaaaacgaatctattggcagacagcgt |
222 |
Q |
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| T |
5390939 |
tgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaacgaatctattggtagacagcgt |
5390840 |
T |
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| Q |
223 |
tacacttttatgcaggta |
240 |
Q |
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|||||||||||||||||| |
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| T |
5390839 |
tacacttttatgcaggta |
5390822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 5395784 - 5395567
Alignment:
| Q |
23 |
tgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatttgaatgggc |
122 |
Q |
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||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5395784 |
tgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaacagatttgaatgggc |
5395685 |
T |
|
| Q |
123 |
tgtgaatattcaacgtgatagctatgcttcatacattggccattttcctttactttcttacttttctatcgctcaaaacgaatctattggcagacagcgt |
222 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
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| T |
5395684 |
tgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaatgaatctattggtagacagcgt |
5395585 |
T |
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| Q |
223 |
tacacttttatgcaggta |
240 |
Q |
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|||||||||||||||||| |
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| T |
5395584 |
tacacttttatgcaggta |
5395567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 50829825 - 50829736
Alignment:
| Q |
23 |
tgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatt |
113 |
Q |
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|||||||| ||||||| ||| |||| |||||| |||| || ||||| |||||||||||| ||| |||| | ||| ||||||| |||||||| |
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| T |
50829825 |
tgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaacttgccattctgatatgaacagatt |
50829736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 50846028 - 50846117
Alignment:
| Q |
23 |
tgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatt |
113 |
Q |
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|||||||| ||||||| ||| |||| |||||| |||| || ||||| |||||||||||| ||| |||| | ||| ||||||| |||||||| |
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| T |
50846028 |
tgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaacttgccattctgatatgaacagatt |
50846117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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