View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_high_13 (Length: 407)
Name: NF11039_high_13
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 156 - 397
Target Start/End: Complemental strand, 22476444 - 22476203
Alignment:
| Q |
156 |
cagatcaagattctgcgttcaattcactaacaggtattgaatctttcattattcagtttcatcaatcgacaattttttctgcaatttgtatattattcct |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476444 |
cagatcaagattctgcgttcaattcactaacaggtattgaatttgtcattattcagtttcatcaatcgacaattttttctgcaatttgtatattattcct |
22476345 |
T |
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| Q |
256 |
caaaatatttgtaaatttgtcaactttaatgctttctacaattataatttttcttcctgatctacatctcaaatactactacttccttatttttgttctc |
355 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476344 |
caaaatatttgtaaatttgtcatctttaatgctttctacaattataatatgtcttcctgatctacatctcaaatactactacttccttatttttgttctc |
22476245 |
T |
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| Q |
356 |
caaagtcatcttttttcatctctatttttattttggtctctg |
397 |
Q |
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| T |
22476244 |
caaagtcatcttttttcatctctatttttattatgatctctg |
22476203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 22476602 - 22476544
Alignment:
| Q |
20 |
ttgaacactgcaattcaatggcaaagttcctctattctctcattgatttcattcaccat |
78 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22476602 |
ttgaacactgcaattcaatggcaaagttcctctatcctctcattgatttcattcaccat |
22476544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 22476544 - 22476493
Alignment:
| Q |
107 |
ttatatttaaggtggcactttataatcatgaattttaattctttcttttcag |
158 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22476544 |
ttatatgtaaggtgtcactttataatcatgaattttaattctttcttttcag |
22476493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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