View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_high_28 (Length: 240)
Name: NF11039_high_28
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5374315 - 5374525
Alignment:
| Q |
12 |
agcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctc |
111 |
Q |
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| T |
5374315 |
agcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctc |
5374414 |
T |
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| Q |
112 |
gatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaac |
211 |
Q |
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| T |
5374415 |
gatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaac |
5374514 |
T |
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| Q |
212 |
aaagtcaagta |
222 |
Q |
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| T |
5374515 |
aaagtcaagta |
5374525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 47368240 - 47368074
Alignment:
| Q |
31 |
tacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacctgaactca |
130 |
Q |
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| T |
47368240 |
tacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtca |
47368141 |
T |
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| Q |
131 |
gataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacc |
197 |
Q |
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| T |
47368140 |
gatacgagcttcacacaactcgaacaccagagttcctcggattggagaaaacaatcactcttttacc |
47368074 |
T |
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