View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11039_high_3 (Length: 689)

Name: NF11039_high_3
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11039_high_3
NF11039_high_3
[»] chr1 (1 HSPs)
chr1 (17-674)||(4373889-4374549)


Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 17 - 674
Target Start/End: Original strand, 4373889 - 4374549
Alignment:
Q  17 atcttgctggtgtagaattgaaagaaacttatatggcgttgctggaaatctttggtttatttgtttccattgtttttctggtaacagaatggcatttgct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4373889 atcttgctggtgtagaattgaaagaaacttatatggcgttgctggaaatctttggtttatttgtttccattgtttttctggtaacagaatggcatttgct 4373988  T
Q  117 ggggatttattcagttgacatattgaagattatttactgacataaagtaataaatataggtccctcctgtggcattgtttcccaattgtcttgtgcaacg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4373989 ggggatttattcagttgacatattgaagattatttactgacataaagtaataaatataggtccctcctgtggcattgtttcccaattgtcttgtgcaacg 4374088  T
Q  217 taaagttcttttcccattcaggaaacaggtaaatcaactttttacttgaagtctgtttaacatctccgagaatctgatcttactcttatactaatggcag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4374089 taaagttcttttcccattcaggaaacaggtaaatcaactttttacttgaagtctgtttaacatctccgagaatctgatcttactcttatactaatggcag 4374188  T
Q  317 gttggaggaactatattggctgcgaaacttgcgaaggagagaggatgggccattaatgtgggaggaggttttcatcactgttctgcagaaaatggtggtg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4374189 gttggaggaactatattggctgcgaaacttgcgaaggagagaggatgggccattaatgtgggaggaggttttcatcactgttctgcagaaaatggtggtg 4374288  T
Q  417 gattttgtgcttacgcagatatttctctatgcatccactttgcttttgttcagttgaatatatcaaggttctatcacatttagactttaaaat-aaaaat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4374289 gattttgtgcttacgcagatatttctctatgcatccactttgcttttgttcagttgaatatatcaaggttctatcacatttagactttaaaataaaaaat 4374388  T
Q  516 tgccggttcgcttattctattaacacctgtgcaaaattgtctgtataatcttcagggtgataattattgatcttgatgcacatcaaggaaatggtcatga 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4374389 tgccggttcgcttattctattaacacctgtgcaaaattgtctgtataatcttcagggtgataattattgatcttgatgcacatcaaggaaatggtcatga 4374488  T
Q  616 aatggactttgccgatgatagtatggccaaaagaatt--tctctcttgtgtttgccttcat 674  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4374489 aatggactttgccgatgatagtatggccaaaagaatttctctctcttgtgtttgccttcat 4374549  T

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