View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11039_high_9 (Length: 459)
Name: NF11039_high_9
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_high_9 |
 | |
|
| [»] scaffold0536 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 28386074 - 28386505
Alignment:
| Q |
17 |
agacgatccattaaacgttagattcgggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28386074 |
agacgatccattaaacgttagattcgggatttgaagcttgtgggccaagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattc |
28386173 |
T |
|
| Q |
117 |
ttctcaacgaaatccccaaccggttcattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28386174 |
ttctcaacgaaatccccaaccgcttcattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgc |
28386273 |
T |
|
| Q |
217 |
ctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagggcggcagatgagagagttttagtaagggattgggcattggagggagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28386274 |
ctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagggcggcagatgagagagttttagtaagggattgggcattggagggagt |
28386373 |
T |
|
| Q |
317 |
ggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagtaaagt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
28386374 |
ggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatatgtccagatgctggatacggaatgaagtgaagt |
28386473 |
T |
|
| Q |
417 |
ttcaatggtctttcaacttcaacaccattcat |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28386474 |
ttcaatggtctttcaacttcaacaccattcat |
28386505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 442
Target Start/End: Original strand, 12541465 - 12541844
Alignment:
| Q |
60 |
gccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggttcattgaggagcattgcgc |
159 |
Q |
| |
|
|||||||||||| |||||||| | | || || ||||| |||||||| |||||||| ||| |||| ||||| ||| ||| ||| |||||||||||| | |
|
|
| T |
12541465 |
gccaagtcattaccccatgagtaagaagagtcggcaatgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcac |
12541564 |
T |
|
| Q |
160 |
cattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtg |
259 |
Q |
| |
|
|||| || || ||||||| ||| || |||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||| || || ||||| |
|
|
| T |
12541565 |
cattgtgaattttccaagaggtaatggggtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtg |
12541664 |
T |
|
| Q |
260 |
aaggcggagggcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagtt |
359 |
Q |
| |
|
|||| |||| || ||| ||||| ||| ||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
12541665 |
aagggtgaggatgg---atgggagagatttggtaagggtttcaacattggagggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagtt |
12541761 |
T |
|
| Q |
360 |
gctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagtaaagtttcaatggtctttcaacttcaacacc |
442 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| ||| |||||||||| || ||| ||||||| |||||||||||||| |
|
|
| T |
12541762 |
gctatatcacaaagagggatcatatgtccagatgctaaatatggaatgaagtgaatttttaatggtcgatcaacttcaacacc |
12541844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 42 - 442
Target Start/End: Original strand, 13440962 - 13441371
Alignment:
| Q |
42 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt |
141 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||| | ||||||| || | || |||||||| ||||||| ||||| | ||||||| ||| | | |
|
|
| T |
13440962 |
gggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatc |
13441061 |
T |
|
| Q |
142 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata |
241 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| ||| |||| |||||||||||| | |||||| |||| ||||| |||||||||||||||||| | |
|
|
| T |
13441062 |
catggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttggga |
13441161 |
T |
|
| Q |
242 |
ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca |
332 |
Q |
| |
|
||| || || |||||||| | ||||||| || || |||||||||| ||| || |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
13441162 |
gggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagggagtggtgatgattgtgact |
13441261 |
T |
|
| Q |
333 |
tgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagtaaagtttcaatggtctttcaa |
432 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||||||| || ||||| |||||||||||| |||| |||||||||| || ||||| ||||| ||| | |
|
|
| T |
13441262 |
tgttggccacgggatgcaaacatagttgctatgtcacaaagagggatcatatgtccagatgctagatatggaatgaagtgaattttcagtggtcgttcca |
13441361 |
T |
|
| Q |
433 |
cttcaacacc |
442 |
Q |
| |
|
|||||||||| |
|
|
| T |
13441362 |
cttcaacacc |
13441371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 42 - 442
Target Start/End: Original strand, 13449125 - 13449534
Alignment:
| Q |
42 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt |
141 |
Q |
| |
|
||||| |||| ||| | ||||||||||||| |||||| | | | ||| || | || |||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
13449125 |
gggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt |
13449224 |
T |
|
| Q |
142 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata |
241 |
Q |
| |
|
| || |||||||| |||||| |||||||||||||||||||| | ||||| || || || | |||||| |||| |||| ||||||| |||||||||| | |
|
|
| T |
13449225 |
ctttaaggagcatcgcgccagtatggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgttggga |
13449324 |
T |
|
| Q |
242 |
ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca |
332 |
Q |
| |
|
|||||| |||||||||||||| || ||| ||| | |||||||||| ||| |||||||||| || |||| |||||||||||||| ||| || |
|
|
| T |
13449325 |
ggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaagggattttgcgttggcgggagtggtgatgactgttact |
13449424 |
T |
|
| Q |
333 |
tgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagtaaagtttcaatggtctttcaa |
432 |
Q |
| |
|
|| |||||||| |||||||||| ||||||||| ||| |||| || ||||| ||||||||||| || | ||||||||||||| |||||||||| ||||| |
|
|
| T |
13449425 |
tgctggccacgggatgcaaacatagttgctatgtcaaaaagagggatcatatgtccagatgcaagaaatggaatgaagtaaactttcaatggttgttcaa |
13449524 |
T |
|
| Q |
433 |
cttcaacacc |
442 |
Q |
| |
|
|||||||||| |
|
|
| T |
13449525 |
cttcaacacc |
13449534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 125 - 442
Target Start/End: Original strand, 13462229 - 13462555
Alignment:
| Q |
125 |
gaaatccccaaccggttcattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttaggg |
224 |
Q |
| |
|
||||||| ||| ||| ||| ||||||||||||||||| |||||||||||||| ||| | | ||| |||||||| | |||||| |||| ||| | ||| |
|
|
| T |
13462229 |
gaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcagga |
13462328 |
T |
|
| Q |
225 |
aggtcgacttgttgataggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggag |
315 |
Q |
| |
|
||| | |||||||| |||||||||| | |||||||| ||| ||| ||||| |||||||||| ||| |||||||||||| | |||||||||| |
|
|
| T |
13462329 |
aggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaagggattggacgttggagggag |
13462428 |
T |
|
| Q |
316 |
tggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagtaaag |
415 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||| | ||||||| ||| |||| || ||||| |||||||||||| |||| |||||||||| || |
|
|
| T |
13462429 |
tggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatcatatgtccagatgctagatatggaatgaagtgcag |
13462528 |
T |
|
| Q |
416 |
tttcaatggtctttcaacttcaacacc |
442 |
Q |
| |
|
||||| |||| ||||||||| ||||| |
|
|
| T |
13462529 |
tttcagtggttgttcaacttctacacc |
13462555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 42 - 442
Target Start/End: Complemental strand, 3416953 - 3416544
Alignment:
| Q |
42 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt |
141 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| | |||| || || | || |||||||| ||||||| || | || ||||||| ||| ||| |
|
|
| T |
3416953 |
gggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtc |
3416854 |
T |
|
| Q |
142 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata |
241 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||||||||| |||| |||||||||| ||||| |||| ||||| ||||||||| | ||||||| | |
|
|
| T |
3416853 |
gatggaggagcattgcgccattgttgatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaa |
3416754 |
T |
|
| Q |
242 |
ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca |
332 |
Q |
| |
|
||| || || |||||||||||||||||| |||||| | || |||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3416753 |
gggaaagtcgacggtgtgaaggcggaggaagaagggagcggcataagaaagagattttgtaagaaatttggcattggagggagtggtgatgattgtgaca |
3416654 |
T |
|
| Q |
333 |
tgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagtaaagtttcaatggtctttcaa |
432 |
Q |
| |
|
||||||||| | |||||||||| || |||||||||| |||| || ||||| || | |||||| |||| |||||||||| || ||||| ||||| ||| | |
|
|
| T |
3416653 |
tgttggccatgggatgcaaacatagctgctatatcagaaagagggatcatatggctagatgcaagataaggaatgaagtgaattttcagtggtcgttcta |
3416554 |
T |
|
| Q |
433 |
cttcaacacc |
442 |
Q |
| |
|
|||||||||| |
|
|
| T |
3416553 |
cttcaacacc |
3416544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 442
Target Start/End: Complemental strand, 12482605 - 12482469
Alignment:
| Q |
306 |
ttggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaa |
405 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| || | || | || ||||| || |||| ||||||| | |||| |
|
|
| T |
12482605 |
ttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgcaatcttgcacatagggatcatatgcccaggtgctggaaatggaa |
12482506 |
T |
|
| Q |
406 |
tgaagtaaagtttcaatggtctttcaacttcaacacc |
442 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
12482505 |
tgaagtgaagtttcaatggtcgttcaacttcaacacc |
12482469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 448
Target Start/End: Complemental strand, 12589333 - 12589195
Alignment:
| Q |
310 |
agggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaa |
409 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||||| ||||| || ||||| || || ||||| || |||| || | |||| |||||||| |
|
|
| T |
12589333 |
agggagtggtggtgattgtgacttgttggccacgggatgcaaacagggttgcaatgtcacatagagggatcatatgcccaggtgatagatatggaatgaa |
12589234 |
T |
|
| Q |
410 |
gtaaagtttcaatggtctttcaacttcaacaccattcat |
448 |
Q |
| |
|
|| |||||| |||||| ||||| |||||| || ||||| |
|
|
| T |
12589233 |
gtgaagttttaatggttgttcaatttcaacgcctttcat |
12589195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 442
Target Start/End: Original strand, 48959176 - 48959312
Alignment:
| Q |
306 |
ttggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaa |
405 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| | |||||||||| ||||||||| ||||| | || ||||| || |||| ||||||||| |||| |
|
|
| T |
48959176 |
ttggagggagtggtgatgattgtcacttgttggccatgggatgcaaacagagttgctatgtcacacatggggatcatatgcccaggtgctggatatggaa |
48959275 |
T |
|
| Q |
406 |
tgaagtaaagtttcaatggtctttcaacttcaacacc |
442 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
48959276 |
tgaagtgaagtttcataggtctatcaacttcaacacc |
48959312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 48963312 - 48963451
Alignment:
| Q |
300 |
tgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggat |
399 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| || ||||||| || |||||| |||| | || ||||| || |||| ||| ||| |
|
|
| T |
48963312 |
tgggcgttggagggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagat |
48963411 |
T |
|
| Q |
400 |
acggaatgaagtaaagtttcaatggtctttcaacttcaac |
439 |
Q |
| |
|
| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
48963412 |
atggaatgaagtgaagtttcaatggtcgttcaacttcaac |
48963451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 12640658 - 12640568
Alignment:
| Q |
279 |
gagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcac |
369 |
Q |
| |
|
||||||| ||| |||| | | ||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||||| |||||| |||| |
|
|
| T |
12640658 |
gagagagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatgggatgcaaacaaagctgctatgtcac |
12640568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 12640761 - 12640677
Alignment:
| Q |
185 |
agggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagg |
269 |
Q |
| |
|
||||| ||||||||||| || || |||||||| | || || ||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
12640761 |
agggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggagg |
12640677 |
T |
|
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Target: scaffold0536 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 418
Target Start/End: Complemental strand, 636 - 530
Alignment:
| Q |
312 |
ggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatgtgtccagatgctggatacggaatgaagt |
411 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||| ||||| | || || || |||||||| || |||||||| || | |||| |||| |||||||||| |
|
|
| T |
636 |
ggagtggtgatgattttaacaaagtggccacgtgaagcaaagagagaggcaatgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagt |
537 |
T |
|
| Q |
412 |
aaagttt |
418 |
Q |
| |
|
||||||| |
|
|
| T |
536 |
aaagttt |
530 |
T |
|
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