View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_12 (Length: 425)
Name: NF11039_low_12
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 28542610 - 28542797
Alignment:
| Q |
11 |
cagagatttaaggtaataaaatattttgtgagaagtgttgacattaaagataaagaaaacgaatttaggaaaatatatactacagaaaagcataataata |
110 |
Q |
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| T |
28542610 |
cagagatttaaggaaataagatattttgtgagaagtgttgacattaaagataaagaaaacgaatttaggaaaatatatactacagaaaagcataataatg |
28542709 |
T |
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| Q |
111 |
tagaaacaaaatacatttttatttgcacacaaaatacatgttatacttttggatgctgtt-agttgaaaactgaaaaatattatcttc |
197 |
Q |
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| T |
28542710 |
tagaaacaaaatacatttttatttgcacacaaaatacatgttatacttttggatgctgttaagttgaaaactgaaaaatattatcttc |
28542797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 265 - 412
Target Start/End: Original strand, 28542865 - 28543012
Alignment:
| Q |
265 |
ccatcccaatcaagttacaaccacccatttgatgctgacaatttttaaattatacttaagaataaatttaatcatgaaaataaaaattattcaattcagt |
364 |
Q |
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| T |
28542865 |
ccatcccaatcaagttacaaccacccatttgatgctgacaatttttaaattatacttaagaataaatttaatcatgaaaataaaaattattcaattcagt |
28542964 |
T |
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| Q |
365 |
aaggccaaatatacaattctactgaatcatacaagtattgtaatttgt |
412 |
Q |
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| T |
28542965 |
aaggccaaatatacaattctactgaatcatacaagtattgtaatttgt |
28543012 |
T |
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