View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11039_low_13 (Length: 412)
Name: NF11039_low_13
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 38188341 - 38188718
Alignment:
| Q |
16 |
ggacatcaagtggcatgttaaataaaaggaatgaaaagattagaagaaaactcacgcgagagattttcctttgaagataattggaggtgcaactgcggcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188341 |
ggacatcaagtggcatgttaaataaaaggaatgaaaagattagaagaaaactcacgcgagagattttcctttgaagataattggaggtgcaactgcggcc |
38188440 |
T |
|
| Q |
116 |
aaaacgcaaaacataatgtggaactgcttggagaaaataggaaaaaattaaataagaccgattagcaaaataagcacagaatgaatggttacttctatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188441 |
aaaacgcaaaacataatgtggaactgcttggagaaaatagtaaaaaattaaataagaccgattagcaaaataagcacagaatgaatggttacttctatga |
38188540 |
T |
|
| Q |
216 |
aaaataaatagaaaacttgccgagtagcataagaaaaaccagccaaattttagagcactgtccgtcctgtaacaggagatgacatagaattatagaacaa |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188541 |
aaaataaatataaaacttgccgagtagcataagaaaaaccagccaaattttagagcactgtccgtcctgtaacaggagatgacatagaattatagaacaa |
38188640 |
T |
|
| Q |
316 |
aacatgacaaaccagtaaaattggattcaatcagactgtaaactaactacctcgtagcacgatatagagggcgatacc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188641 |
aacatgacaaaccagtaaaattggattcaatcagactgtaaactaactacctcgtagcacgatatagagggcgatacc |
38188718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 16183351 - 16183438
Alignment:
| Q |
64 |
aactcacgcgagagattttcctttgaagataattggaggtgcaactgcggccaaaacgcaaaacataatgtggaactgcttggagaaa |
151 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||||| || |||| |||||| |||||| ||||||||| ||||| |
|
|
| T |
16183351 |
aactcacgtgagagattttcctttgaagataattggtggggcaactgcagcgaaaatgcaaaaagcaatgtgcaactgcttgtagaaa |
16183438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 16183527 - 16183565
Alignment:
| Q |
249 |
aaaaaccagccaaattttagagcactgtccgtcctgtaa |
287 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
16183527 |
aaaaaccagccaaacttcagagcactgtccgtcctgtaa |
16183565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University