View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_16 (Length: 342)
Name: NF11039_low_16
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_16 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 37318634 - 37318966
Alignment:
| Q |
6 |
aggagcagagattattcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcga |
105 |
Q |
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| T |
37318634 |
aggagaagagattattcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcga |
37318733 |
T |
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| Q |
106 |
ggtgttcttaggctcccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgcactcgagcgactccatgttggagcaggtaatc |
205 |
Q |
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| T |
37318734 |
ggtgttcttaggctcccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgcactcgagcgactccatgttggagcaggtaatc |
37318833 |
T |
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| Q |
206 |
cgtcccaacaaatatgtaggccaagatctaaatttgaagtgacgcatttgaaaacataatcacaaaaataaagacttgttaagaataggtaggtatcaaa |
305 |
Q |
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| T |
37318834 |
cgtcccaacaaatatgtaggccaagatctaaatttgaagtgacacatttgaaaacataatcacaaaaataaagacttgttaagaa----taggtatcaaa |
37318929 |
T |
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| Q |
306 |
tagatttacatctttgattaatttttatagaatcaat |
342 |
Q |
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| T |
37318930 |
tagatttacatctttgattaatttttatagaatcaat |
37318966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 37283115 - 37283267
Alignment:
| Q |
21 |
tcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttcttaggctc |
120 |
Q |
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| T |
37283115 |
tcgatctgcaatggagctgaaagaggctggaatcagcttcaagaaaagcaaaacaaggagcctcaaagatgtttccttcaatcgaggtgttcttaggctc |
37283214 |
T |
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| Q |
121 |
ccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgc |
173 |
Q |
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| T |
37283215 |
ccaaaattggtggttgacgaccacacagaatgcatgttccttaacctcattgc |
37283267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 37244651 - 37244838
Alignment:
| Q |
16 |
attattcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttctta |
115 |
Q |
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| T |
37244651 |
attattcgatctgcaagagagctccaagaggctggagtacgcttcaagaaaagcgattcaaggagcctcaaagacgtttccttcaatcgaggtgttctta |
37244750 |
T |
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| Q |
116 |
ggctcccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgcactcgagcgactccatgttggagcaggtaa |
203 |
Q |
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| T |
37244751 |
ggctccctgccgtgaaattagatgacagcacaaaatacattttccttaatctcattgcattcgaacgtctccatgttggagctggtaa |
37244838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 37305375 - 37305480
Alignment:
| Q |
23 |
gatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttcttaggctccc |
122 |
Q |
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|||||||| ||||||| || || ||||||||| | |||| || ||||||||| || ||| ||||||||||| ||| |||||||||||||||||||||| |
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| T |
37305375 |
gatctgcaatagagctccatgaagctggaatcagcttcatgaaaagcaaaacaaagaaccttaaagatgtttccttcaatcgaggtgttcttaggctccc |
37305474 |
T |
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| Q |
123 |
aacatt |
128 |
Q |
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||||| |
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| T |
37305475 |
cacatt |
37305480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 37965319 - 37965417
Alignment:
| Q |
19 |
attcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttcttagg |
117 |
Q |
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| T |
37965319 |
attcgatctgcaatagcactccaagaagttggaatcagcttcaagaaaagcaaaacaaagagtctcaaagatttttccttcgatcgaggtgttcttagg |
37965417 |
T |
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