View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_17 (Length: 341)
Name: NF11039_low_17
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 40770131 - 40770442
Alignment:
| Q |
18 |
aaattgatgcaaaaattgagcacatttgacctcaattcctttgaattttgcttcaattgatgctttcttattatcctcccacaaatcaacagcagattgc |
117 |
Q |
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| T |
40770131 |
aaattgatgcaaaaattgagcacatctgacctcaattcctttgaattttgcttcaattgatgctttcttatcatcctcccacaaatcaacagcagattgc |
40770230 |
T |
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| Q |
118 |
atcttatatgccctaattgacattaattatcataagaataagaagatatcattcacctagtcattatagaaaattgaattggatattattgaattaatgt |
217 |
Q |
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| T |
40770231 |
atcttatatgccctaattgacattaattatcataagaataagaagatatcattcacctagtcattatagaaaattgaattggatattattaaattaatgt |
40770330 |
T |
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| Q |
218 |
ctaatattgatatttgaaagcttttatatcttccttttctagcaccttacctattctctacttttgtcttctcattttcttcccatgctttaattaaagc |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40770331 |
ctaatattgatattcgaaagcttttatatcttccttttctagcaccttacctattctctacttttgtcttctcattttcttcccatgctttaattaaagc |
40770430 |
T |
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| Q |
318 |
caatcttttctg |
329 |
Q |
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| T |
40770431 |
caatcttttctg |
40770442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 2870602 - 2870531
Alignment:
| Q |
262 |
ccttacctattctctacttttgtcttctcattttcttcccatgctttaattaaagccaatcttttctgtgct |
333 |
Q |
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| T |
2870602 |
ccttgcctattttctgcctttgtcttttcactttcttcccatgctttaattaaagccaatcttttctctgct |
2870531 |
T |
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