View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11039_low_2 (Length: 840)
Name: NF11039_low_2
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 275 - 820
Target Start/End: Original strand, 2559130 - 2559678
Alignment:
| Q |
275 |
gacaggttatggtattgcacgtgtctcgttagatttgatgttttattttttataaaaccggcatacttactattatacgaaggaccgaaaaatccttcgt |
374 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2559130 |
gacaggttatggtattgcatgtgtctcgttagatttgatgttttatttttgataaaaccggcatacttactattatacgaaggactgaaaaatccttcgt |
2559229 |
T |
|
| Q |
375 |
attactagtccaagtgaagacttgcaatgaagtctgtaggaggatctaaggttgataggaaatggtattagctagtggtgcttggttagtagttggtttg |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2559230 |
attactagtccaagtgaagacttgcaatgaagtctgtaggaggatctaaggttgataggaaatggtattagctagtggtgcttggttagtagttggtttg |
2559329 |
T |
|
| Q |
475 |
tgatttcaatgatacagataaatataatcaagcaaaaaagaaaggaggtgtggcggtgagaattccagaaagcatagtacggtgaatttggagaacagta |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
2559330 |
tgatttcaatgatacagataaatataatcaagcaaaaaagaaaggaggtgtggcggtgagaattccagaaagcatagtgcagtgaatttggagaacagta |
2559429 |
T |
|
| Q |
575 |
acaatgccggaatatttaattttagaagtttggggttacgaaggttggtaaaaaatgaatgaagcttgtctaatgaaactcggttgggctatttgcagag |
674 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2559430 |
acaatgccgaaatatttaattttagaagtttggggttacgaaggttggtaaaaaatgaatgaagcttgtctaatgaaactcggttgggctatttgcagag |
2559529 |
T |
|
| Q |
675 |
gtggtaat---ttatgatatgaagtgttgaggggaaagtttgcgcgagatgagtttcatgttgatcgtatggttgcgaaagcaaatgattccagtgtttt |
771 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2559530 |
gtggtaataagttatgatatgaagtgttgaggggaaagtttgcgcgagatgagtttcatgttgatcgtatggttgcgaaagcaaatgattccagtgtttt |
2559629 |
T |
|
| Q |
772 |
gaaacatttggcacgattgtggcctacatttgggttgtagagaatgaca |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2559630 |
gaaacatttggcacgattgtggcctacatttgggttgtagagaatgaca |
2559678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2558806 - 2559077
Alignment:
| Q |
8 |
aagcatagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcagcaacggaagtcgacaggtaaaatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
2558806 |
aagcatagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcaacatcggaagtcgacaggtaaaatg |
2558905 |
T |
|
| Q |
108 |
aatttcatgtcgttttctagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcatta |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2558906 |
aatttcatgtcgttttccagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaaggaatatataatcgattaaggaaggtcatta |
2559005 |
T |
|
| Q |
208 |
gacaaatagttaacaaagcttaatacgttctctctgatctttgtttcatcacttacactacacctacgacag |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2559006 |
gacaaatagttaacaaagcttaatacgttctctctgatctttgtttcatcacttacactacacctactacag |
2559077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 2551548 - 2551656
Alignment:
| Q |
328 |
aaaaccggcatacttactattatacgaaggaccgaaaaatccttcgtattactagtccaagtgaagacttgcaatgaagtctgtaggaggatctaaggtt |
427 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||| |||||| |||| ||| |||||||||||||||||||| ||||||||| ||||||||||| |||| || |
|
|
| T |
2551548 |
aaaactggcatacttactgttatataaaggacctaaaaattcttcttatcactagtccaagtgaagacttccaatgaagtatgtaggaggat-taagatt |
2551646 |
T |
|
| Q |
428 |
gataggaaat |
437 |
Q |
| |
|
||||| |||| |
|
|
| T |
2551647 |
gatagcaaat |
2551656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 25642261 - 25642353
Alignment:
| Q |
139 |
tatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagcttaat |
231 |
Q |
| |
|
|||| ||||||||| || |||||||||||||||| ||| | |||||||||||||||||| | ||||||||||||||| |||| ||||||| |
|
|
| T |
25642261 |
tatgttgagggatatgttgagtaataattgaaataaaaggaggatataatcgattaaggaatgatattagacaaatagttcacaaggcttaat |
25642353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 18997671 - 18997740
Alignment:
| Q |
162 |
ataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagcttaat |
231 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||| ||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
18997671 |
ataattgaaataaaaggagtatataatcgattcaggaaggatattagacaaatagttcatgaagcttaat |
18997740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 10169172 - 10169270
Alignment:
| Q |
126 |
agacatggaaacatatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaa |
224 |
Q |
| |
|
||||||| ||||||| || ||||| | ||||| |||||||||||||| || | |||||||| ||| |||||||||||||||| | |||||| |||| |
|
|
| T |
10169172 |
agacatgaaaacatacaataagggacagttgaaggaataattgaaataggaggagtatataattgatctaggaaggtcattagacgattagttatcaaa |
10169270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 29277893 - 29277840
Alignment:
| Q |
171 |
atagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaa |
224 |
Q |
| |
|
||||| ||| |||||| |||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
29277893 |
atagatgaagtatatactcgattaaggaagggcattagataattagttaacaaa |
29277840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 35246872 - 35246938
Alignment:
| Q |
162 |
ataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagctt |
228 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |||| | || |||||||| |||||| |
|
|
| T |
35246872 |
ataactgaaataggagaaatatataatcgattaaggaaggaaattaaataattagttaacgaagctt |
35246938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 34049411 - 34049464
Alignment:
| Q |
117 |
tcgttttctagacatggaaacatatgatgagggataagtgaagtaataattgaa |
170 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| || ||| ||||| |
|
|
| T |
34049411 |
tcgtttactagacatggaaacatacgatgagggataagtgaggttatatttgaa |
34049464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 21602479 - 21602398
Alignment:
| Q |
11 |
catagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcagcaacggaagt |
93 |
Q |
| |
|
|||||||| |||||||| | ||||| || ||| |||| ||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
21602479 |
catagggttaggtttgcaatcatatt-aattatccggtcatatgccatggaatcaataatctattttgctcagcaacggaagt |
21602398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University