View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_21 (Length: 286)
Name: NF11039_low_21
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 44202784 - 44203068
Alignment:
| Q |
3 |
caaaggcatcattctgcagcttaattcgtgacttaaaattttgatagcatct-ttgtcgcaattgtaccggttctttttaatgaaagctatcagagttta |
101 |
Q |
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| T |
44202784 |
caaaggcatcattctgcagcttaattcgtgacttaaaattttgatagcatctattgtcgcaattgtaccggttctttttaatgaaagctatcagagttca |
44202883 |
T |
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| Q |
102 |
gacactgttagatggtatttaacctatcaacgataattttaattttactaatcatttatcattcaatagtttcgtcaaatctttgtcacctcgttgcaat |
201 |
Q |
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| T |
44202884 |
gacactgttagatggcatttaacctatcaacgatagttttaattttactaatcatttatcattcaatagtttcgtcaaatctttgtcacctcgttgcaat |
44202983 |
T |
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| Q |
202 |
tgaataagttcactgtaaagcaataatactagatatgcatgggagcataattggaacagcaaagacaattaatttattagtaaac |
286 |
Q |
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| T |
44202984 |
tgaataagttcactgtaaagcaataatactagatatgcatgggagcataattggaacagcaaagacaattaatttattagtaaac |
44203068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 44191511 - 44191786
Alignment:
| Q |
3 |
caaaggcatcattctgcagcttaattcgtgacttaaaattttgatagcatct-ttgtcgcaattgtaccggttctttttaatgaaagctatcagagttta |
101 |
Q |
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||||||| |||||| ||||||| |||||| |||||||| |||||||||| | |||||||||||||||| ||||||||||| | ||| ||||||||| | |
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| T |
44191511 |
caaaggcctcattcaacagcttatttcgtggcttaaaatattgatagcatatattgtcgcaattgtacctgttctttttaaagtaagtcatcagagttca |
44191610 |
T |
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| Q |
102 |
gacactgttagatggtatttaacctatcaacgataattttaattttactaatcatttatcattcaatagtttcgtcaaatctttgtcacctcgttgcaat |
201 |
Q |
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| T |
44191611 |
gacattgttagatgggactcaacctatcaac---------aattttactaatcatttatcattcgatagtttcctcaaatatttgtcacctcggtgcaat |
44191701 |
T |
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| Q |
202 |
tgaataagttcactgtaaagcaataatactagatatgcatgggagcataattggaacagcaaagacaattaatttattagtaaac |
286 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44191702 |
ggaataagttcaccgtaaagcaataatactagatatggatgggagcataattggaacagcaaagacaattactttattagtaaac |
44191786 |
T |
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