View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11039_low_23 (Length: 276)

Name: NF11039_low_23
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11039_low_23
NF11039_low_23
[»] chr4 (2 HSPs)
chr4 (13-268)||(23176114-23176369)
chr4 (231-268)||(39095879-39095916)
[»] chr7 (1 HSPs)
chr7 (153-198)||(25592381-25592426)
[»] chr6 (2 HSPs)
chr6 (153-198)||(22956241-22956286)
chr6 (153-198)||(23832106-23832151)
[»] chr1 (1 HSPs)
chr1 (153-198)||(33240633-33240678)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 23176114 - 23176369
Alignment:
Q  13 agtttcagtgtgagaattattacaaaggctgcacattgatggtagaagacatcctttataaacattgagctaagttaagtttaggaacataatttagctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23176114 agtttcagtgtgagaattattacaaaggctgcacattgatggtagaagacatcctctataaacattgagctaagttaagtttaggaacataatttagctt 23176213  T
Q  113 aatgtttattaaacttaacttagctcaatgaataaagaacaaaaattaaggagtaaatttaaacaaaattttagaaacttaacttagagtcatagatatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23176214 aatgtttattaaacttaacttagctcaatgaataaagaacaaaaattaaggagtaaatttaaacaaaattttagaaacttaacttagagtcatagatatt 23176313  T
Q  213 tagttaccctaaataataaggaatcagatcctctccttcaaaattgtcttcttctc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23176314 tagttaccctaaataataaggaatcagatcctctccttcaaaattgtctccttctc 23176369  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 39095879 - 39095916
Alignment:
Q  231 aggaatcagatcctctccttcaaaattgtcttcttctc 268  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  39095879 aggaatcggatcctctccttcaaaattgtctccttctc 39095916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 25592426 - 25592381
Alignment:
Q  153 aaaaattaaggagtaaatttaaacaaaattttagaaacttaactta 198  Q
    |||||||||||| |||| ||||||||||| |||| |||||||||||    
T  25592426 aaaaattaaggactaaaattaaacaaaatcttaggaacttaactta 25592381  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 22956241 - 22956286
Alignment:
Q  153 aaaaattaaggagtaaatttaaacaaaattttagaaacttaactta 198  Q
    |||||||||||| |||| ||||||||||| |||| |||||||||||    
T  22956241 aaaaattaaggaataaaattaaacaaaatcttaggaacttaactta 22956286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 23832151 - 23832106
Alignment:
Q  153 aaaaattaaggagtaaatttaaacaaaattttagaaacttaactta 198  Q
    |||||||||||| |||| ||||||||||| |||| |||||||||||    
T  23832151 aaaaattaaggaataaaattaaacaaaatcttaggaacttaactta 23832106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 33240633 - 33240678
Alignment:
Q  153 aaaaattaaggagtaaatttaaacaaaattttagaaacttaactta 198  Q
    |||||||||||| |||| ||||||||||| ||| ||||||||||||    
T  33240633 aaaaattaaggactaaaattaaacaaaatcttataaacttaactta 33240678  T

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