View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_25 (Length: 264)
Name: NF11039_low_25
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 34330426 - 34330323
Alignment:
| Q |
143 |
agcagagtttcaccagtagtgatcaatgttaacaatgaaacagaaagcattgttataccagatacaacaagatactcatctgcttcatcaatggatggtt |
242 |
Q |
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| T |
34330426 |
agcagagtttcaccagtagtgatcaatgttaacaatgaaacagaaagcattgttataccagatacaacaagatactcatctgcttcatcaatggatggtt |
34330327 |
T |
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| Q |
243 |
atgc |
246 |
Q |
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|||| |
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| T |
34330326 |
atgc |
34330323 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 34330558 - 34330494
Alignment:
| Q |
11 |
cacagactcgacgatcccacctcagaactcagcatattcgacgcacacaaatacttcaacgaagg |
75 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34330558 |
cacaaactcgacgatcccacctcagaactcagcatattcgacgcacacaaatacttcaacgaagg |
34330494 |
T |
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