View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_27 (Length: 258)
Name: NF11039_low_27
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37319050 - 37319290
Alignment:
| Q |
1 |
aggtaacatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaag |
100 |
Q |
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| T |
37319050 |
aggtaacatcgtttatattctttatggacaccatcatcgacagtaacgtggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaag |
37319149 |
T |
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| Q |
101 |
cgataaagttgtttccaaattgtttaactcgttgtctaaagacataacagtggatcgtcatggagtacttggtgtggtgaggatgagtatgagtgattac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37319150 |
cgataaagttgtttccaaattgtttaactcgttgtctaaagacataacagtggatcgtcatggagtacttgatgtggtgaggatgagtatgagtgattac |
37319249 |
T |
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| Q |
201 |
tgcaagaaaccgtggaaaagatggcgtgctaatctcattca |
241 |
Q |
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| T |
37319250 |
tgcaagaaaccgtggaaaagatggcgtgctaatctcattca |
37319290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37283303 - 37283543
Alignment:
| Q |
1 |
aggtaacatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaag |
100 |
Q |
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|||||| ||| ||| ||| |||||| ||||| ||||| |||||| | || |||||| |||| | ||||||||||||||||||||| ||||| || |
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| T |
37283303 |
aggtaatatcttttgtatgctttatagacactatcattgacagtgctgtagacgttgcaattctcatccgaagtgggatcataatcaactatcttgagag |
37283402 |
T |
|
| Q |
101 |
cgataaagttgtttccaaattgtttaactcgttgtctaaagacataacagtggatcgtcatggagtacttggtgtggtgaggatgagtatgagtgattac |
200 |
Q |
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| T |
37283403 |
tgacaaagctgttgccaaattgttcaactccttggcaaaagaaatcccaatggatcgtgaaggagaacttgaagaggtgacaaagagtatgatttcttac |
37283502 |
T |
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| Q |
201 |
tgcaagaaaccgtggaaaagatggcgtgctaatctcattca |
241 |
Q |
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| T |
37283503 |
tgtaagaagccgtggaaaagttggcgtgcaagtctcattca |
37283543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37244841 - 37244970
Alignment:
| Q |
1 |
aggtaacatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaag |
100 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||| | ||| ||| || |||||| ||||||||||| ||||||| |||||||| | |
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| T |
37244841 |
aggtaacatcttttatatgttttatggacaccatcatcgacactgctcaggacgttccatttcttagtagaagtgggatcctaatcaacgctcttgggaa |
37244940 |
T |
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| Q |
101 |
cgataaagttgtttccaaattgtttaactc |
130 |
Q |
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| T |
37244941 |
cgataaacttgtggccaaattgttcaactc |
37244970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 37965511 - 37965651
Alignment:
| Q |
6 |
acatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaagcgata |
105 |
Q |
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|||||||||||||| || || | ||||||||||||| || ||||||||| || |||| | || || ||||||| |||||||| |||||| | ||| |
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| T |
37965511 |
acatcgtttatatttttaataggcaccatcatcgacggtgctatggatgtttcaattctgagccaaaatgggatcctaatcaatattcttgggaacgacc |
37965610 |
T |
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| Q |
106 |
aagttgtttccaaattgtttaactcgttgtctaaagacata |
146 |
Q |
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| T |
37965611 |
aagttgttgccaacttgttcaactcgatgtccaaagacata |
37965651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 37965690 - 37965745
Alignment:
| Q |
185 |
gagtatgagtgattactgcaagaaaccgtggaaaagatggcgtgctaatctcattc |
240 |
Q |
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|||||||||| | |||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
37965690 |
gagtatgagtcactactataagaaaccttggaaaagatggcgtgctagtctcattc |
37965745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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