View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11039_low_28 (Length: 256)

Name: NF11039_low_28
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11039_low_28
NF11039_low_28
[»] chr1 (14 HSPs)
chr1 (1-239)||(4229658-4229897)
chr1 (1-240)||(4361446-4361680)
chr1 (1-231)||(2603305-2603522)
chr1 (1-173)||(21168216-21168383)
chr1 (1-180)||(21381909-21382083)
chr1 (2-85)||(21076657-21076741)
chr1 (4-207)||(50826477-50826674)
chr1 (1-85)||(23511706-23511791)
chr1 (1-85)||(27902115-27902200)
chr1 (1-85)||(21137751-21137836)
chr1 (1-85)||(27131802-27131887)
chr1 (9-85)||(16406729-16406806)
chr1 (8-45)||(21550625-21550662)
chr1 (1-85)||(22684592-22684677)
[»] chr4 (8 HSPs)
chr4 (1-242)||(1658681-1658923)
chr4 (1-234)||(18566816-18567046)
chr4 (1-174)||(10267317-10267491)
chr4 (1-165)||(3077825-3077984)
chr4 (92-231)||(31079581-31079715)
chr4 (1-165)||(14022308-14022467)
chr4 (1-85)||(49526418-49526503)
chr4 (1-42)||(27812313-27812354)
[»] scaffold0151 (1 HSPs)
scaffold0151 (1-234)||(13950-14184)
[»] chr5 (7 HSPs)
chr5 (1-234)||(10624401-10624636)
chr5 (86-204)||(40936793-40936909)
chr5 (1-89)||(40932975-40933064)
chr5 (1-113)||(16832205-16832311)
chr5 (1-240)||(18156240-18156469)
chr5 (1-173)||(20024324-20024491)
chr5 (92-176)||(18024462-18024547)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-240)||(7515-7752)
[»] chr3 (6 HSPs)
chr3 (1-240)||(43135383-43135621)
chr3 (1-240)||(132269-132490)
chr3 (1-85)||(22445018-22445103)
chr3 (1-165)||(12021353-12021512)
chr3 (1-45)||(13023970-13024014)
chr3 (1-85)||(12844523-12844608)
[»] chr6 (6 HSPs)
chr6 (1-234)||(11794197-11794428)
chr6 (1-240)||(18257908-18258145)
chr6 (1-240)||(16597057-16597286)
chr6 (1-116)||(26460517-26460626)
chr6 (1-85)||(19272267-19272351)
chr6 (188-240)||(19272125-19272177)
[»] chr2 (17 HSPs)
chr2 (1-224)||(37130498-37130721)
chr2 (1-240)||(28567522-28567760)
chr2 (1-234)||(23829650-23829880)
chr2 (1-234)||(23814802-23815032)
chr2 (1-240)||(34827439-34827665)
chr2 (1-234)||(23803181-23803402)
chr2 (8-226)||(21256303-21256508)
chr2 (1-142)||(22593837-22593972)
chr2 (1-165)||(16664561-16664720)
chr2 (1-165)||(22881040-22881199)
chr2 (1-165)||(31818011-31818170)
chr2 (1-85)||(10480355-10480440)
chr2 (2-64)||(25349252-25349314)
chr2 (1-38)||(23190254-23190291)
chr2 (1-38)||(23611509-23611546)
chr2 (1-45)||(21904968-21905012)
chr2 (1-45)||(23769379-23769423)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-234)||(36417-36653)
[»] chr8 (10 HSPs)
chr8 (1-240)||(15337408-15337645)
chr8 (1-240)||(15426473-15426710)
chr8 (1-240)||(15517777-15518014)
chr8 (1-173)||(22697966-22698139)
chr8 (1-173)||(18735466-18735633)
chr8 (1-85)||(29708122-29708207)
chr8 (1-162)||(41438729-41438885)
chr8 (1-85)||(27818286-27818371)
chr8 (1-85)||(15911809-15911894)
chr8 (9-45)||(18846853-18846889)
[»] scaffold0480 (1 HSPs)
scaffold0480 (81-240)||(3861-4019)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-161)||(1290-1444)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-173)||(12417-12583)
[»] chr7 (5 HSPs)
chr7 (1-207)||(18752745-18752945)
chr7 (1-240)||(40342663-40342892)
chr7 (1-113)||(10827729-10827835)
chr7 (1-113)||(11021521-11021627)
chr7 (1-113)||(10864208-10864314)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-177)||(9076-9247)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-173)||(70731-70898)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-165)||(200213-200372)
[»] scaffold0770 (2 HSPs)
scaffold0770 (91-173)||(3597-3680)
scaffold0770 (2-45)||(3696-3739)
[»] scaffold0029 (2 HSPs)
scaffold0029 (91-173)||(101901-101984)
scaffold0029 (2-45)||(102000-102043)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-85)||(45187-45272)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-85)||(116499-116584)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-171)||(249957-250121)
[»] scaffold0014 (1 HSPs)
scaffold0014 (81-173)||(7592-7685)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-85)||(33292-33377)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-83)||(68064-68147)
scaffold0059 (1-83)||(76169-76252)
[»] scaffold0013 (4 HSPs)
scaffold0013 (1-83)||(107510-107593)
scaffold0013 (1-85)||(129254-129339)
scaffold0013 (5-85)||(129871-129952)
scaffold0013 (5-85)||(144702-144783)
[»] scaffold0239 (1 HSPs)
scaffold0239 (1-85)||(16947-17032)
[»] scaffold0297 (1 HSPs)
scaffold0297 (1-85)||(8735-8820)
[»] scaffold0216 (1 HSPs)
scaffold0216 (1-84)||(19925-20009)
[»] scaffold0417 (1 HSPs)
scaffold0417 (1-45)||(1392-1436)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4229897 - 4229658
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  4229897 caagttgcaatgtatgaatatgtgtaccaacttacattcaatcaacacaattcaagttcatttctttaagtgtctttacaatttacaattcacttgtttc 4229798  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4229797 ttttgagcaatttatttacagctatttacaccaatttcgattgggttcaagtgggttgaattcgattgctttttcttactttattttatttatcaaattc 4229698  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcaca 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4229697 ttcaagaataacattaaatttctggaagataacaagcaca 4229658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4361680 - 4361446
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaat----tcatttt-ttaaatgtctttacaatttacaattcacttg 95  Q
    ||||||||||| |||||| |||||||| || ||||||||||||||  ||||| || |    ||||||| |||||||||||||||||||||       |||    
T  4361680 caagttgcaatatatgaacatgtgtaccaatttacattcaatcaatgcaatttaattaagttcattttcttaaatgtctttacaatttac-------ttg 4361588  T
Q  96 tttcttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaa 195  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||   ||||||| |||||||||||||    
T  4361587 tttcttttgagcaattcatttacctttatttacaccaatttcgattgagttcaactgggttgaattcgattgcttt---ttactttcttttatttatcaa 4361491  T
Q  196 attcttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
     |||||||| ||||||||||||||||||  | ||||||| |||||    
T  4361490 gttcttcaacaataacattaaatttctgagaaataacaaacacaa 4361446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2603522 - 2603305
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||| ||| || ||||||||||||||  ||||| || |||||||| |||||||||||||||||||||       |||||||    
T  2603522 caagttgcaatgtatgaacatgtataccaatttacattcaatcaatgcaatttaagttcattttcttaaatgtctttacaatttac-------ttgtttc 2603430  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||| |||||||||||  ||||||||||  |||| |||||||||||||| |||||||||| ||  ||||   ||||||| |    |||||||| |||    
T  2603429 ttttgagtaattcatttacctttatttacactgatttagattgggttcaacttggttgaattctattacttt---ttactttct----tttatcaagttc 2603337  T
Q  200 ttcaagaataacattaaatttctggaagataa 231  Q
    |||||||| || ||||||||||||||| ||||    
T  2603336 ttcaagaacaatattaaatttctggaaaataa 2603305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21168383 - 21168216
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||  ||  |||||||||||||  ||||| || |||||||| ||| |||||||| ||||||||       |||||||    
T  21168383 caagttgcaatgtatgaatatgtgtagcaatctacattcaatcaatgcaatttaagttcattttcttacatgtctttgcaatttac-------ttgtttc 21168291  T
Q  100 ttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    |||||||||||||||| ||  ||||||| |||  | ||||||||| ||||||||||||||||||||| |||||||    
T  21168290 ttttgagcaattcattcacttttatttataccggtcttcgattggattcaactgggttgaattcgattgcttttt 21168216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 21382083 - 21381909
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||| ||||||||||| |||||||| ||  || |||| |||||  ||||| || |||||||| |||||||||||||||  || |       |||||||    
T  21382083 caagttacaatgtatgaacatgtgtaccaatctatattcgatcaatgcaatttaagttcattttcttaaatgtctttacacctttc-------ttgtttc 21381991  T
Q  100 ttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagctttttcttactt 180  Q
    |||||||||||||||||||  ||||||| |||| | ||||||||| |||||||||||| |||||||| ||||||||||||||    
T  21381990 ttttgagcaattcatttacttttatttataccagtcttcgattggattcaactgggttaaattcgattgctttttcttactt 21381909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 21076657 - 21076741
Alignment:
Q  2 aagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |||||  ||| ||||| ||||||||||||| ||||||||    
T  21076657 aagttgcaatgtatgaatatgtgtaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtctttgcaatttac 21076741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 50826477 - 50826674
Alignment:
Q  4 gttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttcttt 102  Q
    |||||||| ||||||| |||| || |||||||||||||||||  ||||| || ||||||| ||||||||||||| ||||||       ||||||||||||    
T  50826477 gttgcaatctatgaatctgtgcactaacttacattcaatcaatgcaatttaagttcatttctttaaatgtctttgcaattt-------acttgtttcttt 50826569  T
Q  103 tgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattctt 201  Q
    | || |||||||||||   ||||| || || |  |||||||| ||||||||||||||||||||| || |||| ||  ||| || | | ||||||||||||    
T  50826570 taagtaattcatttacttctatttgcatcatacctcgattggattcaactgggttgaattcgattgccttttatttattt-ttatttgtatcaaattctt 50826668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 23511706 - 23511791
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||  ||||| |||| ||||| |||||||| |||| ||||||||    
T  23511706 caagttgcaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttaaatacatttctttaaatgcctttgcaatttac 23511791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27902115 - 27902200
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattttt-taaatgtctttacaatttac 85  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || ||||||||| ||||||||||| ||||||||    
T  27902115 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagttcatttttctaaatgtctttgcaatttac 27902200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21137751 - 21137836
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||  |||||  ||| ||||| |||||||| |||| ||||||||    
T  21137751 caagttgcaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttcaatacatttctttaaatgcctttgcaatttac 21137836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27131802 - 27131887
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttac 85  Q
    ||||||||| |||||||| |||||||| || |||||| |||||||  ||||| || |||||||| |||||||||||||||||||||    
T  27131802 caagttgcactgtatgaacatgtgtaccaatttacatccaatcaatgcaatttaagttcattttcttaaatgtctttacaatttac 27131887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 16406806 - 16406729
Alignment:
Q  9 aatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttac 85  Q
    |||||||||| |||||||| || | ||||||||||||  ||||| || || ||||| |||||||||||| ||||||||    
T  16406806 aatgtatgaacatgtgtaccaattgacattcaatcaatgcaatttaagtttattttcttaaatgtctttgcaatttac 16406729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 21550625 - 21550662
Alignment:
Q  8 caatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    |||||||||||||||||||| || ||||||||||||||    
T  21550625 caatgtatgaatatgtgtaccaatttacattcaatcaa 21550662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22684677 - 22684592
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    |||||||||| |||||||  ||||||| ||||| |||||||||||  |||||  ||| ||||| ||||||| ||||| ||||||||    
T  22684677 caagttgcaaagtatgaacctgtgtaccaactttcattcaatcaatgcaattttaatacatttctttaaatatctttgcaatttac 22684592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1658681 - 1658923
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||    
T  1658681 caagttgcaatgtatgaatatgtgtaccaacttacattcaatcaatacaattcaagttcatttctttaaatgtctttacaatttgcaatttacttgtttc 1658780  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  1658781 ttttgagcaattcatttacagttatctacaccaatttcaattgggttcaactgggttgaattcgattgctttttcttactttattttatttatcaagttc 1658880  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaaat 242  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  1658881 ttcaagaataacattcaatttctggaaaataacaagcacaaat 1658923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18567046 - 18566816
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||| |||||||||||||| || |||||||||| ||| ||| || || |||||||| |||||||||||| |||||||||||| |||||||||    
T  18567046 caagttgcaatgaatgaatatgtgtaccaatttacattcaaacaatacactttaagttcattttcttaaatgtctttgcaatttacaatttacttgtttc 18566947  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||| |||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||| |||||    || ||| ||||||||||||  |||    
T  18566946 tttttagcaattcatttacagttatttacacaaattttgactgggttcaactgggttgaattcgattgcttt---ctattttcttttatttatcacgttc 18566850  T
Q  200 ttcaagaataacattaaatttctggaagataacaa 234  Q
    ||||| || || ||||||||||||||| |||||||    
T  18566849 ttcaa-aacaatattaaatttctggaaaataacaa 18566816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 10267317 - 10267491
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  || || || |||||||| |||||||||||| |||||||||||| |||||||||    
T  10267317 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcactttaagttcattttcttaaatgtctttgcaatttacaatttacttgtttc 10267416  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttc 174  Q
    |||| |||||| ||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||    
T  10267417 tttttagcaatacatttgcagttatttacaccgatttcgattgggttcaattgggttgaattcgattgctctttc 10267491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 3077984 - 3077825
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||  ||||| || ||||||| ||||||||||||| ||||||       |||||||||    
T  3077984 caagttgtaatgtatgaatctgtgtaccaacttacattcaatcaatgcaatttaagttcatttctttaaatgtctttgcaattt-------acttgtttc 3077892  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgat 165  Q
    |||| ||  ||||||||||  ||| || || || | ||||||||| |||||||||||||||||||||    
T  3077891 ttttaagtgattcatttacttttaattgcatcatacttcgattggattcaactgggttgaattcgat 3077825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 31079715 - 31079581
Alignment:
Q  92 cttgtttcttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttattta 191  Q
    ||||||||||||||||| |||||||||  || |||| |||  |||||||||| ||  ||||||||||||||||| ||||||||||||||  |    ||||    
T  31079715 cttgtttcttttgagca-ttcatttacttttgtttataccggtttcgattggatttgactgggttgaattcgattgctttttcttacttcgt----ttta 31079621  T
Q  192 tcaaattcttcaagaataacattaaatttctggaagataa 231  Q
     ||| |||||||||||||| ||||||||||  ||||||||    
T  31079620 ccaagttcttcaagaataatattaaatttccagaagataa 31079581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 14022467 - 14022308
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  |||||  ||| ||||| ||||| | || || ||||||       ||||||||     
T  14022467 caagttgcaatgtatgaatatgtgtactaacttacattcaatcaatgcaatttcaatacatttctttaagtatcattgcaattt-------acttgttta 14022375  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgat 165  Q
    ||||||| |||||||||||  ||| || ||||| | ||| ||||| ||||||||||||| |||||||    
T  14022374 ttttgagtaattcatttacttttacttgcaccatacttcaattggattcaactgggttggattcgat 14022308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 49526503 - 49526418
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttac 85  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || ||  |||| |||| ||||||| ||||||||    
T  49526503 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttgttttcttaattgtctttgcaatttac 49526418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27812354 - 27812313
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaat 42  Q
    ||||||||||||||||||||||| ||| || |||||||||||    
T  27812354 caagttgcaatgtatgaatatgtctaccaatttacattcaat 27812313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 14184 - 13950
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||   | || || |||||||| |||||||||||| |||||||||||| |||||||||    
T  14184 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatttattttaagttcattttcttaaatgtctttgcaatttacaatttacttgtttc 14085  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||    
T  14084 ttttgagcagttcatttacagttatttacatcgatttcgattgggttcaactgggttaaattcgattgctttttcttactttattttatttatcaagttc 13985  T
Q  200 ttcaagaataacattaaatttctggaagataacaa 234  Q
    ||||||||||| ||||||||||||||| |||||||    
T  13984 ttcaagaataatattaaatttctggaaaataacaa 13950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10624401 - 10624636
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttttt--aaatgtctttacaatttacaattcacttgttt 98  Q
    |||||||||||||||||| |||||||| || ||||||||||| || ||| || || |||||||| |  |||||||||| |||||||||||| ||||||||    
T  10624401 caagttgcaatgtatgaacatgtgtaccaatttacattcaataaatacactttaagttcattttcttaaaatgtctttgcaatttacaatttacttgttt 10624500  T
Q  99 cttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaatt 198  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||    
T  10624501 cttttgagcaattcatttacagttatttacaccgatttcgattgggttcaaatgggttgaattcaattgctttttcttactttattttatttatcaagtt 10624600  T
Q  199 cttcaagaataacattaaatttctggaagataacaa 234  Q
    |||||||||||| ||||| ||| ||||| |||||||    
T  10624601 cttcaagaataatattaagtttttggaaaataacaa 10624636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 40936793 - 40936909
Alignment:
Q  86 aattcacttgtttcttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattt 185  Q
    |||| |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| ||  |||||  ||||||| |||    
T  40936793 aatttacttgtttcttttgagcaattcatttatcgttatttacaccgatttcgattgggttcaactgggttgaattcaattactttt--ttactttcttt 40936890  T
Q  186 tatttatcaaattcttcaa 204  Q
    |||||||||  ||||||||    
T  40936891 tatttatcacgttcttcaa 40936909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 40932975 - 40933064
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaatt 89  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||| || |||||||  |||||||||||| ||||||| ||||    
T  40932975 caagttgcaatgtatgaatatgtgtaccaatttacattcaatcaatacaatttaagttcatttccttaaatgtctttgcaatttataatt 40933064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16832205 - 16832311
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| ||||||||||| ||  |||||||||||||||       |||||||||    
T  16832205 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaaattcattttcttttatgtctttacaattt-------acttgtttc 16832297  T
Q  100 ttttgagcaattca 113  Q
    ||||||||||||||    
T  16832298 ttttgagcaattca 16832311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 18156240 - 18156469
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| || ||| ||||||||||  ||||| || ||||||||  ||||||||||||||||||       |||||||||    
T  18156240 caagttgcaatgtatgaatctgtgtaccaatttatattcaatcaatgcaatttaagttcattttcctaaatgtctttacaattt-------acttgtttc 18156332  T
Q  100 ttttgagcaattca-tttacggttatttacacc-aatttcgattgggttcaactgggttgaattcgatagctttttcttactttattt-tatttatcaaa 196  Q
     |||||||||||||  ||||   |||||   || || ||||||||| ||||||| |||||||| |||| |||||       ||||||| | ||||||||     
T  18156333 gtttgagcaattcacgttacttgtatttttgcctaacttcgattggattcaactaggttgaatccgattgcttt-------tttatttctttttatcaag 18156425  T
Q  197 ttcttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||||||||| || | ||||||||||||||||||||| |||||    
T  18156426 ttcttcaagaacaataataaatttctggaagataacaaacacaa 18156469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 20024491 - 20024324
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||  || || || |||||||| |||||||||||| ||||||       |||||||||    
T  20024491 caagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgcattttaagttcattttcttaaatgtctttgcaattt-------acttgtttc 20024399  T
Q  100 ttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    |||| ||||| ||||| ||  ||| |||  ||  | ||||||||| |||||||||||||||||| || |||||||    
T  20024398 ttttaagcaactcattcacttttacttatcccggtcttcgattggattcaactgggttgaattctattgcttttt 20024324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 18024462 - 18024547
Alignment:
Q  92 cttgtttcttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagctttttctt 176  Q
    |||||||||||||| | ||||||||||  ||||||| || | | || |||||| |||||||||||||||||| ||  |||||||||    
T  18024462 cttgtttcttttgaaccattcatttactcttatttatactagtctttgattggattcaactgggttgaattcaattactttttctt 18024547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7515 - 7752
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||  ||||||||||||||||| |||||| || |||||||  ||||||||||||||||||||||||| |||||||||    
T  7515 caagttgcaatgtatgaacatgtgtatcaacttacattcaatcaatacaattaaagttcatttaattaaatgtctttacaatttacaatttacttgtttc 7614  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||| || ||   |||||||  |||||||||||| |||    
T  7615 ttttgagcaattcatttacctttatttacaccgatttcgattgggttcaactaggttgaattcgattgcatt---ttactttcctttatttatcaagttc 7711  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||||||||||| ||||||||||||| ||||||| |||||    
T  7712 ttcaagaataacactaaatttctggaaaataacaaacacaa 7752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43135621 - 43135383
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||| |||||||||| |||||||| || |||||||||||||| |||||| || |||||||| |||||||||||| |||| ||||||| |||||||||    
T  43135621 caagttgtaatgtatgaacatgtgtaccaatttacattcaatcaatacaatttaagttcattttcttaaatgtctttgcaatatacaatttacttgtttc 43135522  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaa-att 198  Q
    |||||| |||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||   | ||| ||||||| ||||||||||||| |||    
T  43135521 ttttgaacaattcatttaccgttatttacaccgatttcgattgagttcaacagggttgaattcgat---tgttttttactttcttttatttatcaagatt 43135425  T
Q  199 cttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  43135424 cttcaagaataacattaaatttctggaaaataacaaacacaa 43135383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 132490 - 132269
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || ||  |||| |||||||||||| ||||||       |||||||||    
T  132490 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttgttttcttaaatgtctttgcaattt-------acttgtttc 132398  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||||||||||  ||||||||||      |||||| |||||||||||||||||| ||| |||||   ||||||| ||   |||||||| |||    
T  132397 ttttgagcaattcatttacttttatttacac-----acgattgagttcaactgggttgaatttgattgcttt---ttactttctt---tttatcaagttc 132309  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  132308 ttcaagaacaacattaaatttctggaa-ataacaaacacaa 132269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22445018 - 22445103
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||||||| ||||||| |||||||||| | ||||  ||||| || ||||||| ||||||||||||| ||||||||    
T  22445018 caagttgcaatgtatgaatttgtgtaccaacttacatttagtcaatccaatttaagttcatttctttaaatgtctttgcaatttac 22445103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 12021512 - 12021353
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||||||||| || |||||||||||| |||   |||||  ||| ||||| ||||||||||||| ||||||       |||||||      
T  12021512 caagttgcaatgtatgaatatgtgcaccaacttacattcagtcatggcaatttcaatacatttctttaaatgtctttgcaattt-------acttgttca 12021420  T
Q  100 ttttgagcaattcatttacggttatttaca-ccaatttcgattgggttcaactgggttgaattcgat 165  Q
    |||| || ||||| ||||| ||||||| || | || ||||||||| ||||||||| |||||||||||    
T  12021419 ttttaagtaattcctttactgttatttgcatcaaacttcgattggattcaactggattgaattcgat 12021353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13023970 - 13024014
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  13023970 caagttgcaatgtatgaatatgtgtaccaacttacattcaatcaa 13024014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 12844608 - 12844523
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    |||||||||||||||||| ||||  || |||||||||||||||||  |||||  ||| ||||| ||||||||||||| ||||||||    
T  12844608 caagttgcaatgtatgaaaatgtacaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtctttgcaatttac 12844523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11794197 - 11794428
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| |||||| || |||||||| |||||||||| | |||||||||||| |||||| ||    
T  11794197 caagttgcaatgtatgaacatgtgtaccaacttacattcaatcaatacaatttaagttcattttcttaaatgtctctgcaatttacaattgacttgtctc 11794296  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||||||||| |||||   ||| ||| ||||||||||||| |||    
T  11794297 ttttgagcaattcatttacctttatttacaccgatttcgattgggttaaactgggttgaattcgattgcttt---ttaatttcttttatttatcaagttc 11794393  T
Q  200 ttcaagaataacattaaatttctggaagataacaa 234  Q
    | |||||| ||||| |||||||||||| |||||||    
T  11794394 tccaagaacaacatcaaatttctggaaaataacaa 11794428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18258145 - 18257908
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||  || |||||||||||||| |||||| || |||||||| |||||||| ||| |||| ||||||| | |||||||    
T  18258145 caagttgcaatgtatgaacatgtgtatcaatttacattcaatcaatacaatttaagttcattttcttaaatgtttttgcaatctacaatttatttgtttc 18258046  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaa-att 198  Q
    |||||| |||||||||||| || ||||||||| ||||||||| |||||||| ||||||||||| ||   || || ||||||| ||||||||||||| |||    
T  18258045 ttttgaacaattcatttaccgtcatttacaccgatttcgatt-ggttcaaccgggttgaattcaat---ttctttttactttcttttatttatcaagatt 18257950  T
Q  199 cttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  18257949 cttcaagaataacattaaatttctggaaaataacaaacacaa 18257908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16597286 - 16597057
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || |||||||| |||||||||||||||||||||       |||||||    
T  16597286 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagttcattttcttaaatgtctttacaatttac-------ttgtttc 16597194  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||| || ||| |||||||  || ||||| |||||||||||||| ||||||||| ||||||||||| |||||||   | ||| ||||||||||||| |||    
T  16597193 ttttaagtaatacatttacttttttttactccaatttcgattggattcaactgg-ttgaattcgattgcttttt---aatttcttttatttatcaagttc 16597098  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||    
T  16597097 ttcaataataacattaaatttctagaaaataacaaacacaa 16597057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26460626 - 26460517
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || |||||||| |||||||||||||||||||       |||||||||    
T  26460626 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagttcattttcttaaatgtctttacaattt-------acttgtttc 26460534  T
Q  100 ttttgagcaattcattt 116  Q
    |||||||||||||||||    
T  26460533 ttttgagcaattcattt 26460517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19272351 - 19272267
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttac 85  Q
    ||||||||| |||||||| |||||||| || ||||||||||||||  ||||| || || ||||| ||||| |||||||||||||||    
T  19272351 caagttgca-tgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttattttcttaaacgtctttacaatttac 19272267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 19272177 - 19272125
Alignment:
Q  188 tttatcaaattcttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||| ||||||||||| || | ||||||||||||| ||||||| |||||    
T  19272177 tttatcaagttcttcaagaacaatactaaatttctggaaaataacaaacacaa 19272125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37130498 - 37130721
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||  |||||| || |||||||  ||||||||||||| |||||||| || |||||||||    
T  37130498 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcagtacaatttaagttcatttccttaaatgtctttataatttacagtttacttgtttc 37130597  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||| || ||||||| ||||||| |||| |||||||| |||    
T  37130598 ttttgagcaattcatttaccgttatttacaccgatttcgattgggttcaactaagttgaattcaattgcttttt-ttactttcttttctttatcaagttc 37130696  T
Q  200 ttcaagaataacattaaatttctgg 224  Q
    |||||||||||||||||||||||||    
T  37130697 ttcaagaataacattaaatttctgg 37130721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28567760 - 28567522
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||| | |||| || |||||||  |||||||||||| |||||||||| | | |||||||    
T  28567760 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatataatttaagttcatttccttaaatgtctttgcaatttacaacttaattgtttc 28567661  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||||||||||||  |||| |||||||  ||||||||||||||||||| ||||||||| ||  | |||  ||||||| |||||||||||| ||||    
T  28567660 ttttgagcaattcatttatcgttaattacaccggtttcgattgggttcaactgagttgaattcaattaccttt--ttactttcttttatttatcacattc 28567563  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||||| |||||||||| ||||| ||||||| |||||    
T  28567562 ttcaagaatagcattaaatttttggaaaataacaaacacaa 28567522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23829880 - 23829650
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||| ||| || || |||||||| |||||||||||| || | ||||||| |||||||||    
T  23829880 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatacactttaagttcattttcttaaatgtctttgcagtctacaatttacttgtttc 23829781  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||||||||||  |||||||||||  |||||||||||||||||| ||||||||||||| |||||   | ||||| || |||||||||| |||    
T  23829780 ttttgagcaattcatttacctttatttacaccggtttcgattgggttcaactaggttgaattcgattgcttt---taactttcttctatttatcaagttc 23829684  T
Q  200 ttcaagaataacattaaatttctggaagataacaa 234  Q
    ||||| ||||| || |||||||||||| |||||||    
T  23829683 ttcaa-aataaaataaaatttctggaaaataacaa 23829650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23815032 - 23814802
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||| ||| || || |||||||| |||||||||||| || ||||||||| |||||||||    
T  23815032 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatacactttaagttcattttcttaaatgtctttgcagtttacaatttacttgtttc 23814933  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||||||||||  |||||||||||  ||| |||||||||||| |||||||||||| ||   | ||| ||||||| | |||||||| || |||    
T  23814932 ttttgagcaattcatttacctttatttacaccggttttgattgggttcaagtgggttgaattcaat---tgttttttactttctcttatttattaagttc 23814836  T
Q  200 ttcaagaataacattaaatttctggaagataacaa 234  Q
    ||||| ||||| ||||||||| ||||| |||||||    
T  23814835 ttcaa-aataatattaaatttttggaaaataacaa 23814802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34827665 - 34827439
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||| |||||||||| |||||||| || ||||||||||||||  ||||| || |||||||| ||||||||||||||| |||||       |||||||    
T  34827665 caagttgtaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagttcattttcttaaatgtctttacagtttac-------ttgtttc 34827573  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    |||||||||||||||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||| |||||   ||||||| |    |||||||| |||    
T  34827572 ttttgagcaattcatttacctttatttacaccgatttcgattggattcaagtgggttgaattcgattgcttt---ttactttct----tttatcaagttc 34827480  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||| || ||||||||||||||| ||||||| |||||    
T  34827479 ttcaagaacaatattaaatttctggaaaataacaaacacaa 34827439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23803402 - 23803181
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaa-ttcatttt-ttaaatgtctttacaatttacaattcacttgttt 98  Q
    |||||||||||||||||| |||||||| || |||||||||||||| ||| ||  || |||||||| |||||| |||||||||| ||||||| ||||||||    
T  23803402 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatacacttttaagttcattttcttaaatatctttacaatctacaatttacttgttt 23803303  T
Q  99 cttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaatt 198  Q
    ||||||||||||||||||||  |||||||||||          || ||||| ||||||||||||||| |||||   ||||||| || |||||||||| ||    
T  23803302 cttttgagcaattcatttacctttatttacacc----------ggtttcaattgggttgaattcgattgcttt---ttactttcttctatttatcaagtt 23803216  T
Q  199 cttcaagaataacattaaatttctggaagataacaa 234  Q
    |||||| ||||| ||||||||||||||| |||||||    
T  23803215 cttcaa-aataatattaaatttctggaaaataacaa 23803181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 21256508 - 21256303
Alignment:
Q  8 caatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttcttttgag 106  Q
    ||||||||||| |||||||| || ||||||||||||||  ||||| || || ||||| |||||||||||||||||||||       ||||||||||||||    
T  21256508 caatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttattttcttaaatgtctttacaatttac-------ttgtttcttttgag 21256416  T
Q  107 caattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattcttcaaga 206  Q
    ||||||||||||  || |||||||| ||||| ||||  ||||||||||||||||||||| |||||   ||||||| |    |||||| | ||||||||||    
T  21256415 caattcatttacctttgtttacaccgatttcaattgaattcaactgggttgaattcgattgcttt---ttactttct----tttatcgagttcttcaaga 21256323  T
Q  207 ataacattaaatttctggaa 226  Q
    | |||||||||||| |||||    
T  21256322 acaacattaaatttatggaa 21256303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 22593837 - 22593972
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||| ||||||||||  ||||| || |||||||| |||||||||||||||||||       |||||||||    
T  22593837 caagttgcaatgtatgaacatgtgtaccaatttatattcaatcaatgcaatttaagttcattttcttaaatgtctttacaattt-------acttgtttc 22593929  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattg 142  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  22593930 ttttgagcaattcgtttacctttatttacaccaatttcgattg 22593972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 16664720 - 16664561
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| | ||||| ||| |||||||| ||||  ||||| || ||||||| ||||||||||||| ||||||       ||||||||     
T  16664720 caagttgcaatgtatgaatctatgtaccaacctacattcagtcaatgcaatttaagttcatttctttaaatgtctttgcaattt-------acttgttta 16664628  T
Q  100 ttttgagcaattcatttacggttatttaca-ccaatttcgattgggttcaactgggttgaattcgat 165  Q
    ||||||| |||||||||||  |||||  || |  | ||||||||| |||||||||||||||||||||    
T  16664627 ttttgagtaattcatttacttttattcgcatcgtacttcgattggattcaactgggttgaattcgat 16664561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 22881040 - 22881199
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||   |||| |||| ||||| ||||||||||||| ||||||       ||||||||     
T  22881040 caagttgcaatgtatgaatatgtgtaccaagttacattcactcaatgaaatttaaatgcatttctttaaatgtctttgcaattt-------acttgttta 22881132  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgat 165  Q
    ||||||| |||||||||||  |||||  || || | ||||||||| ||||| ||||||| |||||||    
T  22881133 ttttgagtaattcatttacctttattcgcatcatacttcgattggattcaattgggttggattcgat 22881199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 31818011 - 31818170
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||| |||||||||| |||| |||||||||||| ||||  |||||  ||||||||| ||||||||| ||| ||||||       ||||||||     
T  31818011 caagttgcaatatatgaatatgagtaccaacttacattcagtcaatgcaatttcaattcatttctttaaatgtttttgcaattt-------acttgttta 31818103  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgat 165  Q
    ||||||| |||||||||||  | |||  || || | ||||||||| |||||| ||||||||||||||    
T  31818104 ttttgagtaattcatttactttcattcgcatcatacttcgattggattcaaccgggttgaattcgat 31818170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10480440 - 10480355
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttac 85  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || ||  |||| |||||||||||| ||||||||    
T  10480440 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttgttttcttaaatgtctttgcaatttac 10480355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 25349314 - 25349252
Alignment:
Q  2 aagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt 64  Q
    ||||||||||||||| |||||||||| || ||||||||||||||  ||||| || ||||||||    
T  25349314 aagttgcaatgtatggatatgtgtaccaatttacattcaatcaatgcaatttaagttcatttt 25349252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23190291 - 23190254
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacatt 38  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  23190291 caagttgcaaagtatgaatatgtgtacaaactttcatt 23190254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23611546 - 23611509
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacatt 38  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  23611546 caagttgcaaagtatgaatatgtgtacaaactttcatt 23611509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21905012 - 21904968
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    |||||| ||||||||||| |||||||| || ||||||||||||||    
T  21905012 caagttacaatgtatgaacatgtgtaccaatttacattcaatcaa 21904968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23769423 - 23769379
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    |||||| ||||||||||| |||||||| || ||||||||||||||    
T  23769423 caagttacaatgtatgaacatgtgtaccaatttacattcaatcaa 23769379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36417 - 36653
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt--tttaaatgtctttacaatttacaattcacttgttt 98  Q
    |||||||||||||||||| |||||||| ||||||||||  |||||  |||||||| |||||||  || |||||||||| |||||||||||| ||||||||    
T  36417 caagttgcaatgtatgaacatgtgtaccaacttacatttgatcaattcaattcaagttcatttacttaaaatgtctttgcaatttacaatttacttgttt 36516  T
Q  99 cttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagc-tttttcttactttattttatttatcaaat 197  Q
    | |||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| ||||| |    
T  36517 catttgagcaattcatttccagttatttacaccgatttcgattggattcaactgggttgaattcgattgcttttttcttactttattttattcatcaagt 36616  T
Q  198 tcttcaagaataacattaaatttctggaagataacaa 234  Q
    ||||||||||||  ||||| |||||| || |||||||    
T  36617 tcttcaagaatagtattaagtttctgaaaaataacaa 36653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15337408 - 15337645
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||| |||||| || |||||||  ||||| |||||| |||||||||||| |||||||||    
T  15337408 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatacaatttaagttcatttccttaaaagtctttgcaatttacaatttacttgtttc 15337507  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||  | |||  ||||||| ||||| ||||||  |||    
T  15337508 ttttgagcaat-catttatcgttatttacaccgatttcgattgggttcaactgggttgaattcgattaccttt--ttactttcttttacttatcaggttc 15337604  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  15337605 ttcaagaataacattaaatttctagaaaataacaaacacaa 15337645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15426473 - 15426710
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||| |||||| || |||||||  ||||| |||||| |||||||||||| |||||||||    
T  15426473 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatacaatttaagttcatttccttaaaagtctttgcaatttacaatttacttgtttc 15426572  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||  | |||  ||||||| ||||| ||||||  |||    
T  15426573 ttttgagcaat-catttatcgttatttacaccgatttcgattgggttcaactgggttgaattcgattaccttt--ttactttcttttacttatcaggttc 15426669  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  15426670 ttcaagaataacattaaatttctagaaaataacaaacacaa 15426710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15517777 - 15518014
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || |||||||||||||| |||||| || |||||||  ||||| |||||| |||||||||||| |||||||||    
T  15517777 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatacaatttaagttcatttccttaaaagtctttgcaatttacaatttacttgtttc 15517876  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaattc 199  Q
    ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||  | |||  ||||||| ||||| ||||||  |||    
T  15517877 ttttgagcaat-catttatcgttatttacaccgatttcgattgggttcaactgggttgaattcgattaccttt--ttactttcttttacttatcaggttc 15517973  T
Q  200 ttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  15517974 ttcaagaataacattaaatttctagaaaataacaaacacaa 15518014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 22698139 - 22697966
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||| |||||||| ||| || || |||||||| |||||||||||  || | ||||||| |||||||||    
T  22698139 caagttgcaatgtatgaacatgtgtaccaatttacagtcaatcaatacattttaagttcattttcttaaatgtcttggcagtctacaatttacttgtttc 22698040  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    ||||||| |||||||||||  |||||||||||  |||||||||||||||||| ||||||||||||| |||||||    
T  22698039 ttttgagtaattcatttacctttatttacaccgctttcgattgggttcaactaggttgaattcgattgcttttt 22697966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 18735466 - 18735633
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||| ||||| ||  |||||||||||||  ||||| || |||||||| |||||||||||| ||||||||       |||||||    
T  18735466 caagttgcaatgtatgaatatctgtaccaatctacattcaatcaatgcaatttaagttcattttcttaaatgtctttgcaatttac-------ttgtttc 18735558  T
Q  100 ttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    |||||||||||||||| ||  ||||||| |||  | ||||||||||||||||||| ||||||||||| |||||||    
T  18735559 ttttgagcaattcattcacttttatttataccggtcttcgattgggttcaactggattgaattcgattgcttttt 18735633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29708207 - 29708122
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    |||||||||||||||||||||||| || |||||||||||||||||  |||||  ||| ||||| ||||||||| ||| ||||||||    
T  29708207 caagttgcaatgtatgaatatgtgcaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtttttgcaatttac 29708122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 41438885 - 41438729
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||| ||| ||||||||| || ||||  |||||  ||| ||||| ||||||||||||| ||||||       ||||||||     
T  41438885 caagttgcaatgtatgaatatgtataccaacttacatccagtcaatgcaatttcaatacatttctttaaatgtctttgcaattt-------acttgttta 41438793  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattc 162  Q
    ||||||| |||||||||||  |||||  || || | ||||||||| ||||||||||||| ||||    
T  41438792 ttttgagtaattcatttacttttattcgcatcatacttcgattggattcaactgggttggattc 41438729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27818286 - 27818371
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttac 85  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || ||  |||| |||||||||||| ||||||||    
T  27818286 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttgttttcttaaatgtctttgcaatttac 27818371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15911809 - 15911894
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatt-ttttaaatgtctttacaatttac 85  Q
    |||||| ||||||||||| |||||||| || ||||||||||||||  ||||| || ||  || | |||| ||||||||||||||||    
T  15911809 caagttacaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttgttctcttaattgtctttacaatttac 15911894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 18846853 - 18846889
Alignment:
Q  9 aatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  18846853 aatgtatgaatctgtgtacaaatttacattcaatcaa 18846889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 3861 - 4019
Alignment:
Q  81 tttacaattcacttgtttctttt-gagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttact 179  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||| || |||  |||||    
T  3861 tttacaattcacttgtttctttttgagcaattcatttacctttatttacaccgatttcgattggattcaactgggttgaattcgattgccttt--ttact 3958  T
Q  180 ttattttatttatcaaattcttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||| ||| ||| |||||    
T  3959 ttattttatttatcaagttcttcaagaataacgttaaatttttggaaaatagcaaacacaa 4019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 1444 - 1290
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||||||||||  ||||| || |||||||| |||||||||||||||||||||       |||||||    
T  1444 caagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagttcattttcttaaatgtctttacaatttac-------ttgtttc 1352  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaatt 161  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  1351 ttttgagcaattcatttacctttatttacaccgatttcgattgggttcaactgggttgaatt 1290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 12417 - 12583
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || || ||||||| |||  ||||| || |||||||| |||||||||||||||||||||       |||||||    
T  12417 caagttgcaatgtatgaacatgtgtaccaatttgcattcaaccaatgcaatttaagttcattttcttaaatgtctttacaatttac-------ttgtttc 12509  T
Q  100 ttttgagcaattcatttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    |||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||    
T  12510 ttttgagcaattcatttacctttatttacaccgatttcaattgggttcaactgggttgaatttgattgcttttt 12583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 18752745 - 18752945
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||  ||||| || ||||||| ||||||||||||| ||||||       |||||||||    
T  18752745 caagttgcaatgtatgaatctgtgtaccaacttacattcaatcaatgcaatttaagttcatttctttaaatgtctttgcaattt-------acttgtttc 18752837  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgatagctttttcttactttattttattt--atcaaa 196  Q
    ||||||| |||||||||||  |||||| || || ||||||||||| ||||||||||||||||||||| || ||   |||||| |||||||||  |||||     
T  18752838 ttttgagtaattcatttacttttatttgcatcatatttcgattggattcaactgggttgaattcgattgcctt---ttacttaattttattttcatcaag 18752934  T
Q  197 ttcttcaagaa 207  Q
    |||||||||||    
T  18752935 ttcttcaagaa 18752945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40342892 - 40342663
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||||||| || ||||||| ||||||  ||||| || ||  |||| |||||||||||| ||||||||       |||||||    
T  40342892 caagttgcaatgtatgaacatgtgtaccaatttacatttaatcaatgcaatttaagtttgttttcttaaatgtctttgcaatttac-------ttgtttc 40342800  T
Q  100 ttttgagcaattca-tttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagctttttcttactttattttatttatcaaatt 198  Q
    |||||| || || | |||||  |||||| ||||||||||| |||  ||||| ||||||||||||||| ||||||    ||||| ||||||||||||| ||    
T  40342799 ttttgaacattttactttacttttattt-caccaatttcggttgaattcaattgggttgaattcgattgctttt----actttcttttatttatcaagtt 40342705  T
Q  199 cttcaagaataacattaaatttctggaagataacaagcacaa 240  Q
    ||||||||||||| |||||||||||||| ||||||| |||||    
T  40342704 cttcaagaataactttaaatttctggaaaataacaaacacaa 40342663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 10827835 - 10827729
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| || | ||||||||||||  ||||| || ||||||||  ||||||||||||||||||       |||||||||    
T  10827835 caagttgcaatgtatgaatctgtgtaccaattcacattcaatcaatgcaatttaagttcattttcctaaatgtctttacaattt-------acttgtttc 10827743  T
Q  100 ttttgagcaattca 113  Q
    ||||||||||||||    
T  10827742 ttttgagcaattca 10827729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11021627 - 11021521
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| || | ||||||||||||  ||||| || ||||||||  ||||||||||||||||||       |||||||||    
T  11021627 caagttgcaatgtatgaatctgtgtaccaattcacattcaatcaatgcaatttaagttcattttcctaaatgtctttacaattt-------acttgtttc 11021535  T
Q  100 ttttgagcaattca 113  Q
    ||||||||||||||    
T  11021534 ttttgagcaattca 11021521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 10864208 - 10864314
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| || | ||||||||||||  ||||| || ||||||||  |||||||| |||||||||       |||||||||    
T  10864208 caagttgcaatgtatgaatctgtgtaccaattcacattcaatcaatgcaatttaagttcattttcctaaatgtccttacaattt-------acttgtttc 10864300  T
Q  100 ttttgagcaattca 113  Q
    ||||||||||||||    
T  10864301 ttttgagcaattca 10864314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9076 - 9247
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||  ||||| || |||||||| |||||||||||| ||||||       |||||||||    
T  9076 caagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgcaatttaagttcattttcttaaatgtctttgcaattt-------acttgtttc 9168  T
Q  100 ttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagctttttctta 177  Q
    |||||||||||||||| ||  ||||||| | |  | ||||||||| ||||||| ||||||||| ||| |||||||||||    
T  9169 ttttgagcaattcattcacttttatttatatcggtcttcgattggattcaactaggttgaatttgattgctttttctta 9247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 70731 - 70898
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    |||||||||||||||||| |||| ||| || ||||||||| ||||  ||||| || |||||||| |||||||||||||||  || |       |||| ||    
T  70731 caagttgcaatgtatgaacatgtttaccaatttacattcagtcaatgcaatttaagttcattttcttaaatgtctttacagctttc-------ttgtctc 70823  T
Q  100 ttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    |||||||||||||||||||  ||||||| |||  | ||||||||| ||||||||||||||||||||| |||||||    
T  70824 ttttgagcaattcatttacttttatttataccggtcttcgattggattcaactgggttgaattcgattgcttttt 70898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 200213 - 200372
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| |||||| |||| |||||  ||||| || ||||||| |||||| |||||| ||||||       |||||||||    
T  200213 caagttgcaatgtatgaatctgtgtaccaacttatattcgatcaatgcaatttaagttcatttctttaaacgtctttgcaattt-------acttgtttc 200305  T
Q  100 ttttgagcaattcatttacggttatttacacca-atttcgattgggttcaactgggttgaattcgat 165  Q
    ||||||| |||||||||||  |||||| || || | || |||||| ||||||| |||||||||||||    
T  200306 ttttgagtaattcatttacttttatttgcatcatactttgattggattcaactaggttgaattcgat 200372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 3680 - 3597
Alignment:
Q  91 acttgtttcttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    ||||||||||||||||||||||||||||  |||||||||||  | |||||| || ||||||||||||||||||||| |||||||    
T  3680 acttgtttcttttgagcaattcatttacttttatttacaccggtcttcgatcggattcaactgggttgaattcgattgcttttt 3597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 3739 - 3696
Alignment:
Q  2 aagttgcaatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    |||||||||||||||||||||||||| ||  |||||||||||||    
T  3739 aagttgcaatgtatgaatatgtgtaccaatctacattcaatcaa 3696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 101984 - 101901
Alignment:
Q  91 acttgtttcttttgagcaattcatttacggttatttacaccaat-ttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    ||||||||||||||||||||||||||||  |||||||||||  | |||||| || ||||||||||||||||||||| |||||||    
T  101984 acttgtttcttttgagcaattcatttacttttatttacaccggtcttcgatcggattcaactgggttgaattcgattgcttttt 101901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 102043 - 102000
Alignment:
Q  2 aagttgcaatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    |||||||||||||||||||||||||| ||  |||||||||||||    
T  102043 aagttgcaatgtatgaatatgtgtaccaatctacattcaatcaa 102000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 45272 - 45187
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    |||||||||||||||||||||||| || |||||||||||||||||  |||||  ||| ||||| ||||||||||||| ||||||||    
T  45272 caagttgcaatgtatgaatatgtgcaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtctttgcaatttac 45187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 116499 - 116584
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||  |||||  ||| ||||| ||||||||||||| ||||||||    
T  116499 caagttgcaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttcaatacatttctttaaatgtctttgcaatttac 116584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 250121 - 249957
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatttt-ttaaatgtctttacaatttacaattcacttgtttc 99  Q
    ||||||||||||||||||| ||||||| || |||||||||||||| ||| || || || ||||| |||| || ||||||| |||       |||||||||    
T  250121 caagttgcaatgtatgaatttgtgtaccaatttacattcaatcaatacattttaagtttattttcttaagtgcctttacatttt-------acttgtttc 250029  T
Q  100 ttttgagcaattca-tttacggttatttacaccaatttcgattgggttcaactgggttgaattcgatagcttt 171  Q
    |||||| ||||| | ||||| |||| ||| || ||||||||||| |||||||| ||||||||| ||| |||||    
T  250028 ttttgaacaatttattttactgttactta-acaaatttcgattgagttcaacttggttgaatttgattgcttt 249957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 7592 - 7685
Alignment:
Q  81 tttacaattcacttgtttcttttgagcaattcatttacggttatttaca-ccaatttcgattgggttcaactgggttgaattcgatagcttttt 173  Q
    ||||||||| |||||||||||||||| |||||||||||  |||||| || | || || |||||| || |||||||||||||||||| |||||||    
T  7592 tttacaatttacttgtttcttttgagtaattcatttacttttatttgcatcaaactttgattggattaaactgggttgaattcgattgcttttt 7685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33377 - 33292
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||  ||||| |||| ||||| |||||||| |||| ||||||||    
T  33377 caagttggaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttaaatacatttctttaaatgcctttgcaatttac 33292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 68147 - 68064
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaattt 83  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||  ||||| || ||||||| | ||||||||||| ||||||    
T  68147 caagttgcaatgtatgaatctgtgtactaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaattt 68064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 76252 - 76169
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaattt 83  Q
    ||||||||||||||||||| ||||||| | |||||||||  ||||  ||||| || ||||||| | ||||||||||| ||||||    
T  76252 caagttgcaatgtatgaatctgtgtactatcttacattctgtcaatgcaatttaagttcatttctctaaatgtctttgcaattt 76169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 107510 - 107593
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaattt 83  Q
    ||||||||||||||||||| ||||||| |||||||||||  ||||  ||||| || ||||||| ||||||||||||| ||||||    
T  107510 caagttgcaatgtatgaatctgtgtaccaacttacattccgtcaatgcaatttaagttcatttctttaaatgtctttgcaattt 107593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 129254 - 129339
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||||||| ||||||  |||||||||||| ||||  ||||| || ||||||| | ||||||||||| ||||||||    
T  129254 caagttgcaatgtatgaatctgtgtaacaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttac 129339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 129871 - 129952
Alignment:
Q  5 ttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||| ||| ||  |||||||||||| ||||  ||||| || ||||||| | ||||||||||| ||||||||    
T  129871 ttgcaatgtatgaatttgtatatcaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttac 129952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 144702 - 144783
Alignment:
Q  5 ttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    ||||||||||||||| ||| ||  |||||||||||| ||||  ||||| || ||||||| | ||||||||||| ||||||||    
T  144702 ttgcaatgtatgaatctgtatatcaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttac 144783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17032 - 16947
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaatttac 85  Q
    |||||||||||||||||| ||||| || |||||||||||||||||  |||||  | | ||||| ||||||||||||| ||||||||    
T  17032 caagttgcaatgtatgaacatgtgcaccaacttacattcaatcaatgcaatttcactacatttctttaaatgtctttgcaatttac 16947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8820 - 8735
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcatt-ttttaaatgtctttacaatttac 85  Q
    |||||| ||||||||||| |||||||| || ||||||||||||||  ||||| || || ||| | |||||||||||| ||||||||    
T  8820 caagttacaatgtatgaacatgtgtaccaatttacattcaatcaatgcaatttaagtttattctcttaaatgtctttgcaatttac 8735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20009 - 19925
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaacacaattcaaattcattt-tttaaatgtctttacaattta 84  Q
    ||||||||||||||||||||  || || |||||||||||||||||  |||||  ||| ||||| |||||||| |||| |||||||    
T  20009 caagttgcaatgtatgaatagatgcaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgcctttgcaattta 19925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1392 - 1436
Alignment:
Q  1 caagttgcaatgtatgaatatgtgtacaaacttacattcaatcaa 45  Q
    |||||||||||||||||  |||||||| || ||||||||||||||    
T  1392 caagttgcaatgtatgatcatgtgtaccaatttacattcaatcaa 1436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University