View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_29 (Length: 252)
Name: NF11039_low_29
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33701124 - 33700877
Alignment:
| Q |
1 |
aaaatgaaacgttgaatgtttaataagttgcttatatagtcatgcatgactatttaagcaaaa---------cnnnnnnnnnnnnnngggttgaaaaata |
91 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
33701124 |
aaaatgaaacgttgaatgtttaataggttgcttatatagtcatgcatgactatttaagcaaaactattttttctgttttttttttttgggttgaaaaata |
33701025 |
T |
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| Q |
92 |
aatttaacaaggtctcattccttctaaggagatattgtctatgagatacgaacatagacattagacacacaaacatgaatgtaaatacatgtgtcggtgt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||| |
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| T |
33701024 |
aatttaacaaggtctcattccttctaaggagatattgtctatgagatacgaacatggagac---acacacaaacatgaatgtaaacacatgtgtcagtgt |
33700928 |
T |
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| Q |
192 |
cgtgtttaagccacgctcttgttgtcttttgcttgagactttttgcctatg |
242 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
33700927 |
cgtgtttaagccacgttcttgttgtcttttgcttgagagtttttgcctatg |
33700877 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 23851496 - 23851529
Alignment:
| Q |
167 |
tgaatgtaaatacatgtgtcggtgtcgtgtttaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
23851496 |
tgaatgtaaacacatgtgtcggtgtcgtgtttaa |
23851529 |
T |
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