View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_30 (Length: 242)
Name: NF11039_low_30
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 17245532 - 17245327
Alignment:
| Q |
19 |
ggttaataaacaaaaattaaaggaacaataaaaaagagaagaaccaaaatatgttagaaattacctctgtgatatttgcttgagaatttgtatcataata |
118 |
Q |
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| T |
17245532 |
ggttaataaacaaaatataaaggaacaataaaaaaggtaagaaccaaaatatgttagaaagtacctctgtgatatttgcttgagaatttgtgtcataata |
17245433 |
T |
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| Q |
119 |
tttgacaagttctaggacatagatgatgccatattgagttactagggatgttatccttggttgatcagaaggtggataaaaggaaagaatcaatggtggc |
218 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17245432 |
tttgacaagctctaggacataggtgatgccatattgagttactagggatgttatccttggatgatcagaaggtggataaaaggaaagaatcaatggtggc |
17245333 |
T |
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| Q |
219 |
ttgttc |
224 |
Q |
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|||||| |
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| T |
17245332 |
ttgttc |
17245327 |
T |
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