View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_34 (Length: 233)
Name: NF11039_low_34
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_34 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 40965003 - 40964775
Alignment:
| Q |
17 |
aattggaacctccaggtactcaaattccaacttgccaagcattctagaaatcaagcacacatataccctgcacctaggcccaggcagaaaaac--agaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40965003 |
aattggaacctccaggtactcaaattccaacttgccaagcattctagaaatcaagcacacatataccctgcacctaggcccaggcagaaaaacaaagaaa |
40964904 |
T |
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| Q |
115 |
aaatatgtggttgtcttgagaaattaaagggagaagggtgctcttttccgtttttctcttgtgtttggatagagggtttatgaag----------agaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
40964903 |
aaatatgtggttgtcttgagaaattaaagggagaagggtgctcttttccgttttcctcttgtgtttggatagagggtttatgaagagaagagaaaagaag |
40964804 |
T |
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| Q |
205 |
ggagagtttacttttcatttttaaattac |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40964803 |
ggagagtttacttttcatttttaaattac |
40964775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 41676516 - 41676457
Alignment:
| Q |
174 |
tgtgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
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||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
41676516 |
tgtgtttggatcgagggtttaggaagagaggggagggtttacttttcatttttaaattac |
41676457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 10392108 - 10392049
Alignment:
| Q |
174 |
tgtgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
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||||||||||| ||||||||| || | || | ||||||||||||||| |||||||||||| |
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| T |
10392108 |
tgtgtttggatggagggtttaggaggggaggagagagtttacttttcgtttttaaattac |
10392049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 38509898 - 38509962
Alignment:
| Q |
174 |
tgtgtttggatagagggtttatgaagagaagggagag-----tttacttttcatttttaaattac |
233 |
Q |
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||||||||||||||||||||| || | |||||||||| || |||||||||||||||||||| |
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| T |
38509898 |
tgtgtttggatagagggtttaggaggggaagggagaggagggttcacttttcatttttaaattac |
38509962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 33922531 - 33922586
Alignment:
| Q |
176 |
tgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaatt |
231 |
Q |
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|
||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
33922531 |
tgtttggattgagggtttaggaagggaagggagagtttacttttcttttttaaatt |
33922586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 42650544 - 42650512
Alignment:
| Q |
201 |
gaagggagagtttacttttcatttttaaattac |
233 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
42650544 |
gaagggagagtttacttttcgtttttaaattac |
42650512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 20147110 - 20147051
Alignment:
| Q |
174 |
tgtgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
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||||||||||| ||||||||| || | |||||||| |||||||||||||||||||||||| |
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| T |
20147110 |
tgtgtttggattgagggtttaggaggggaagggagggtttacttttcatttttaaattac |
20147051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 2556226 - 2556193
Alignment:
| Q |
199 |
gagaagggagagtttacttttcatttttaaatta |
232 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
2556226 |
gagaagagagagtttacttttcatttttaaatta |
2556193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 2247814 - 2247871
Alignment:
| Q |
176 |
tgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
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||||||||||||| ||||| |||||||||||| ||| | |||||||||||||||||| |
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| T |
2247814 |
tgtttggatagagagtttagaaagagaagggagggttcatttttcatttttaaattac |
2247871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 2248014 - 2247977
Alignment:
| Q |
196 |
gaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
2248014 |
gaagtgaagggagagtttacttttcttttttaaattac |
2247977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 45742095 - 45742066
Alignment:
| Q |
204 |
gggagagtttacttttcatttttaaattac |
233 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45742095 |
gggagagtttacttttcatttttaaattac |
45742066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 34235244 - 34235184
Alignment:
| Q |
173 |
ttgtgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
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|
|||||||||||| ||||||||| || |||| | | | |||||||||||||||||||||||| |
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| T |
34235244 |
ttgtgtttggattgagggtttaggaggagaggagggtgtttacttttcatttttaaattac |
34235184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 41008418 - 41008359
Alignment:
| Q |
174 |
tgtgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
| |
|
||||||||||| |||||||| || | ||||| ||||||||| ||||||||||||||||| |
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| T |
41008418 |
tgtgtttggatgcagggtttaggaggggaaggaagagtttacatttcatttttaaattac |
41008359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 30891034 - 30891062
Alignment:
| Q |
205 |
ggagagtttacttttcatttttaaattac |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30891034 |
ggagagtttacttttcatttttaaattac |
30891062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 12541774 - 12541833
Alignment:
| Q |
174 |
tgtgtttggatagagggtttatgaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
| |
|
||||||||||| ||||||||| || | || |||||||| |||||||| |||||||||||| |
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| T |
12541774 |
tgtgtttggattgagggtttaggaggggaggggagagtctacttttcttttttaaattac |
12541833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 36347754 - 36347717
Alignment:
| Q |
196 |
gaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
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| T |
36347754 |
gaagggaagggagagtttacttttcttttttaaattac |
36347717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 1203 - 1240
Alignment:
| Q |
196 |
gaagagaagggagagtttacttttcatttttaaattac |
233 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
1203 |
gaagagaggggagagtttacttttcttttttaaattac |
1240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 24560422 - 24560393
Alignment:
| Q |
204 |
gggagagtttacttttcatttttaaattac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
24560422 |
gggagagtttacttttcatttttaaattac |
24560393 |
T |
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