View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_6 (Length: 537)
Name: NF11039_low_6
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 518
Target Start/End: Original strand, 43850703 - 43851192
Alignment:
| Q |
14 |
tggacatcattaggttgattggaaacatcggttaattccagcacgtgactctacaaacattctttgctgctccgataatgcttgttcttctgtcatctca |
113 |
Q |
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| T |
43850703 |
tggacatcattaggttgattggaaacatcggttaattccagcaggtgactctacaaacattctttgctgctccgataatgcttgttcttctgtcatctca |
43850802 |
T |
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| Q |
114 |
gttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgctccaaagccaatccataaacgttaga |
213 |
Q |
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| T |
43850803 |
gttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgctccaaagccaatccataaacgttaga |
43850902 |
T |
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| Q |
214 |
ataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaattcacaaaccacataacaagctattatttacattcaagttc |
313 |
Q |
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| T |
43850903 |
ataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaaatcacaaaccacataacaagctattatttacattcaagttc |
43851002 |
T |
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| Q |
314 |
aatcgaagaactttaagacatagatcaccgtacaaactgcaggagatccgtaaatcataaaggttaacctactcattagcaagggtagtaaatggttact |
413 |
Q |
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| T |
43851003 |
aatcgaagaacgctaagacatagatcaccgtacaaactccaggagattcataaatcataaaggttaacctactcattagcaagggtagtaaatggttact |
43851102 |
T |
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| Q |
414 |
cttcccttttctttagagaaatcaactacagacagaaaccaaccagacacagaaccagattacaagcatcaatagtataactaacactaccaaagactaa |
513 |
Q |
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| T |
43851103 |
cttcccttttcttcagagaaatcaacta---------------cagacacagaaccagattacaagcatcaatagtataactaacactaccaaagactaa |
43851187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 24012369 - 24012500
Alignment:
| Q |
48 |
attccagcacgtgactctacaaacattctttgctgctccgataatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgt |
147 |
Q |
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|||| |||||||| |||| ||||||| ||||||||||| | |||||||||||| || |||||||||| ||| | ||||||||||| |||||||||| || |
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| T |
24012369 |
attctagcacgtgcctctgcaaacatcctttgctgctctgctaatgcttgttcctcggtcatctcagctgcgccactccacttggcaccttttatagagt |
24012468 |
T |
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| Q |
148 |
cctgctgcaaggtaacaaatatatcagaaaat |
179 |
Q |
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| T |
24012469 |
cttgctgcaaggcaacaaatacatcagaaaat |
24012500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 375
Target Start/End: Original strand, 24012625 - 24012783
Alignment:
| Q |
212 |
gaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaattcacaaaccacataacaagctattat-ttacattcaag |
310 |
Q |
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||||||||||||||||||||||||| ||| | || | |||||||||| ||| |||| | ||||||||| |||||||| | | ||||||||||| |
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| T |
24012625 |
gaataataaaatctagaccctgtgtacattc------atactcatcactcttcaatctcaaaacgcaaaccacagaacaagctgtaaaattacattcaag |
24012718 |
T |
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| Q |
311 |
ttcaatcgaagaactttaagacatagatcaccgtacaaactgcaggagatccgtaaatcataaag |
375 |
Q |
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||||||| | ||||| ||| |||||||| ||| |||||||| || |||||| |||||||||||| |
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| T |
24012719 |
ttcaatctatgaactctaaaacatagatgaccatacaaactccaagagatcgataaatcataaag |
24012783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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