View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11039_low_7 (Length: 495)
Name: NF11039_low_7
Description: NF11039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11039_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 217 - 482
Target Start/End: Original strand, 43163444 - 43163709
Alignment:
| Q |
217 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgttttcactgctgcattttgatgaggtacatt |
316 |
Q |
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| T |
43163444 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgttttaactggtgcattttgatgaggtatatt |
43163543 |
T |
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| Q |
317 |
tgaaacattctatgctgacttgtattcgtgtgggtttaagtatcgtaacttggaagtacctatggtgctaactatcagcagttgctaatgtgaacattat |
416 |
Q |
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| T |
43163544 |
tgaaacattgtatgctgacttgtattcgtgtgggtttaagtatcgtaacttggaagtacctatggtgctaactatcagcagttgctaatgtgaacattat |
43163643 |
T |
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| Q |
417 |
atgctgagttgcatttccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcc |
482 |
Q |
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| T |
43163644 |
atgctgagttgcatttccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcc |
43163709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 43163285 - 43163445
Alignment:
| Q |
19 |
atgaaattgcatgcttacatttctttattatcctgttcgattttctgttgaaggcattgatagattatatcttatgtacaatttaaaatttgagtatatt |
118 |
Q |
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| T |
43163285 |
atgaaattgcatgcttacatttctttattatcctgttcgattttctgtcgaaggcattgatagattatatcttatgtacaatttagaatttgagtatatt |
43163384 |
T |
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| Q |
119 |
gtgtatatcgtgaaaattgatgattgctattaaatttacaggtctgtgaaaaccaaggtat |
179 |
Q |
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| T |
43163385 |
gtgtatatcgtgaaaattgatgattgcgattatatttacaggtctgggaaaaccaaggtat |
43163445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 51464267 - 51464367
Alignment:
| Q |
118 |
tgtgtatatcgtgaaaattgatgattgctattaaatttacaggtctgtgaaaaccaaggtatgcgcgt-aatataccagagggagagagaaagagattga |
216 |
Q |
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| T |
51464267 |
tgtgtatatcatgaaaattgatgattgccattaaatttacaggtctgggaaaaccaaggtttgtgcgtaaatataccagagg----gagaaagagattga |
51464362 |
T |
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| Q |
217 |
atcca |
221 |
Q |
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||||| |
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| T |
51464363 |
atcca |
51464367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 51464397 - 51464452
Alignment:
| Q |
224 |
tgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattt |
283 |
Q |
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| T |
51464397 |
tgattaggtttggtaatcttgggttct----ttataacaaaacagaaaggttccatattt |
51464452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 51464469 - 51464547
Alignment:
| Q |
316 |
ttgaaacattctatgctgacttgtattcgtgtgggtttaagtatcgtaacttggaagtacctatggtgctaactatcag |
394 |
Q |
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| T |
51464469 |
ttgaaacattatatgccgacttgcattggtgtacatctgagtatcgtagcttgtatgtacctatggtgctaactatcag |
51464547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 51464610 - 51464660
Alignment:
| Q |
432 |
tccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcc |
482 |
Q |
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| T |
51464610 |
tccttgttgcagcatgttttacataatgtgggaaatgttcatttgatgtcc |
51464660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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